Information for 11-ACAGCATGTAATC (Motif 10)

C G T A G T A C C G T A A C T G A G T C T C G A A C G T A C T G C G A T C G T A C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C G T C G T A A G T C C G T A A C G T A C T G A G T C A C G T A C T G A C G T
p-value:1e-11
log p-value:-2.585e+01
Information Content per bp:1.938
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.4 +/- 31.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ACAGCATGTAATC
GAGCACAGCAGGACA--
 A C G T A C G T A C G T A C G T C G T A G T A C C G T A A C T G A G T C T C G A A C G T A C T G C G A T C G T A C G T A A C G T A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ACAGCATGTAATC
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T C G T A G T A C C G T A A C T G A G T C T C G A A C G T A C T G C G A T C G T A C G T A A C G T A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ACAGCATGTAATC
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T C G T A G T A C C G T A A C T G A G T C T C G A A C G T A C T G C G A T C G T A C G T A A C G T A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCATGTAATC
DCTCAGCAGG-----
 A C G T A C G T C G T A G T A C C G T A A C T G A G T C T C G A A C G T A C T G C G A T C G T A C G T A A C G T A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:ACAGCATGTAATC--
---AGATGCAATCCC
 C G T A G T A C C G T A A C T G A G T C T C G A A C G T A C T G C G A T C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCATGTAATC
GRACAGWMTGTYCTB
 A C G T A C G T C G T A G T A C C G T A A C T G A G T C T C G A A C G T A C T G C G A T C G T A C G T A A C G T A G T C
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:ACAGCATGTAATC--
-------YTAATCCY
 C G T A G T A C C G T A A C T G A G T C T C G A A C G T A C T G C G A T C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.56
Offset:7
Orientation:forward strand
Alignment:ACAGCATGTAATC--
-------TTAATCCG
 C G T A G T A C C G T A A C T G A G T C T C G A A C G T A C T G C G A T C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ACAGCATGTAATC
CACAGCAGGGGG--
 A C G T C G T A G T A C C G T A A C T G A G T C T C G A A C G T A C T G C G A T C G T A C G T A A C G T A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ACAGCATGTAATC--
AATATACATGTAATATA
 A C G T A C G T C G T A G T A C C G T A A C T G A G T C T C G A A C G T A C T G C G A T C G T A C G T A A C G T A G T C A C G T A C G T
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T