Information for 17-CTAARCTCCATTGGCT (Motif 29)

A G T C G A C T C G T A C G T A C T A G A G T C A C G T G A T C A G T C G C T A C A G T A C G T A C T G A T C G A G T C C G A T
Reverse Opposite:
C G T A T A C G T A G C T A G C G T C A G T C A C G A T A C T G C A T G C G T A A C T G G A T C G A C T G A C T C G T A T A C G
p-value:1e-7
log p-value:-1.834e+01
Information Content per bp:1.689
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif48.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets49.7 +/- 26.4bp
Average Position of motif in Background55.5 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CTAARCTCCATTGGCT----
----ANTCCTTTGTCTNNNN
 A G T C G A C T C G T A C G T A C T A G A G T C A C G T G A T C A G T C G C T A C A G T A C G T A C T G A T C G A G T C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:CTAARCTCCATTGGCT---
-------TGATTGGCTANN
 A G T C G A C T C G T A C G T A C T A G A G T C A C G T G A T C A G T C G C T A C A G T A C G T A C T G A T C G A G T C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.56
Offset:7
Orientation:forward strand
Alignment:CTAARCTCCATTGGCT-
-------CCATTGTTTT
 A G T C G A C T C G T A C G T A C T A G A G T C A C G T G A T C A G T C G C T A C A G T A C G T A C T G A T C G A G T C C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CTAARCTCCATTGGCT
------CCGATTGGCT
 A G T C G A C T C G T A C G T A C T A G A G T C A C G T G A T C A G T C G C T A C A G T A C G T A C T G A T C G A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CTAARCTCCATTGGCT---
----NNNCCATTGTGTNAN
 A G T C G A C T C G T A C G T A C T A G A G T C A C G T G A T C A G T C G C T A C A G T A C G T A C T G A T C G A G T C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTAARCTCCATTGGCT
CTAATCCTCTT-----
 A G T C G A C T C G T A C G T A C T A G A G T C A C G T G A T C A G T C G C T A C A G T A C G T A C T G A T C G A G T C C G A T
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.54
Offset:7
Orientation:forward strand
Alignment:CTAARCTCCATTGGCT
-------CCWTTGTY-
 A G T C G A C T C G T A C G T A C T A G A G T C A C G T G A T C A G T C G C T A C A G T A C G T A C T G A T C G A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTAARCTCCATTGGCT
--AGGVNCCTTTGT--
 A G T C G A C T C G T A C G T A C T A G A G T C A C G T G A T C A G T C G C T A C A G T A C G T A C T G A T C G A G T C C G A T
A C G T A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CTAARCTCCATTGGCT
----GCTTCC------
 A G T C G A C T C G T A C G T A C T A G A G T C A C G T G A T C A G T C G C T A C A G T A C G T A C T G A T C G A G T C C G A T
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CTAARCTCCATTGGCT--
--AANTTCAAGTGGCTTN
 A G T C G A C T C G T A C G T A C T A G A G T C A C G T G A T C A G T C G C T A C A G T A C G T A C T G A T C G A G T C C G A T A C G T A C G T
A C G T A C G T C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A