Information for 9-GTTRATTTATAAA (Motif 11)

A C T G A C G T C A G T T C G A C G T A A C G T C G A T A C G T G T C A C A G T C G T A C G T A C G T A
Reverse Opposite:
C G A T A C G T C G A T G T C A A C G T C G T A C G T A C G T A C G A T A G C T G C T A G T C A G T A C
p-value:1e-11
log p-value:-2.641e+01
Information Content per bp:1.804
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif38.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets47.2 +/- 29.9bp
Average Position of motif in Background51.6 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0051.1_Hoxa4/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GTTRATTTATAAA-
CNAGTTAATTAATAANN
 A C G T A C G T A C G T A C T G A C G T C A G T T C G A C G T A A C G T C G A T A C G T G T C A C A G T C G T A C G T A C G T A A C G T
T G A C T C G A G T C A T C A G G C A T G A C T G T C A C G T A G A C T A C G T C T G A C G T A A G C T C T G A C T G A G A C T G A T C

PB0080.1_Tbp_1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GTTRATTTATAAA----
-TCTTTATATATAAATA
 A C T G A C G T C A G T T C G A C G T A A C G T C G A T A C G T G T C A C A G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

PH0059.1_Hoxb4/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTTRATTTATAAA-
CGCGTTAATTAATTACC
 A C G T A C G T A C G T A C T G A C G T C A G T T C G A C G T A A C G T C G A T A C G T G T C A C A G T C G T A C G T A C G T A A C G T
T A G C C T A G G T A C C T A G G A C T G A C T G T C A C G T A C G A T A C G T C T G A C T G A A G C T G C A T T G C A G T A C A G T C

PH0146.1_Pou3f1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTTRATTTATAAA---
AATTAATTAATTAATTC
 A C G T A C T G A C G T C A G T T C G A C G T A A C G T C G A T A C G T G T C A C A G T C G T A C G T A C G T A A C G T A C G T A C G T
C T G A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T C G A T G T A C

PH0018.1_Dbx1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTTRATTTATAAA--
TAATTAATTAATAATTA
 A C G T A C G T A C T G A C G T C A G T T C G A C G T A A C G T C G A T A C G T G T C A C A G T C G T A C G T A C G T A A C G T A C G T
G A C T G C T A C T G A G C A T G C A T G C T A C G T A G C A T G C A T C G T A G C T A G C A T C G T A T C G A C G A T C G A T C T G A

Hoxc9/MA0485.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTTRATTTATAAA-
-NTGATTTATGGCC
 A C T G A C G T C A G T T C G A C G T A A C G T C G A T A C G T G T C A C A G T C G T A C G T A C G T A A C G T
A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GTTRATTTATAAA-
--DGWTTTATGRCN
 A C T G A C G T C A G T T C G A C G T A A C G T C G A T A C G T G T C A C A G T C G T A C G T A C G T A A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0149.1_Pou3f4/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTTRATTTATAAA---
AATTAATTAATTAATTC
 A C G T A C T G A C G T C A G T T C G A C G T A A C G T C G A T A C G T G T C A C A G T C G T A C G T A C G T A A C G T A C G T A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PH0142.1_Pou1f1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTTRATTTATAAA---
GATTAATTAATTAAGTC
 A C G T A C T G A C G T C A G T T C G A C G T A A C G T C G A T A C G T G T C A C A G T C G T A C G T A C G T A A C G T A C G T A C G T
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C

PB0198.1_Zfp128_2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTTRATTTATAAA
TGTATATATATACC
 A C G T A C T G A C G T C A G T T C G A C G T A A C G T C G A T A C G T G T C A C A G T C G T A C G T A C G T A
C A G T C A T G G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G A C T C G T A T G A C A T G C