Information for 13-TAMTTACATC (Motif 13)

A C G T C G T A G T C A A C G T A C G T C G T A G T A C C T G A A C G T A T G C
Reverse Opposite:
A T C G G T C A A G C T A C T G A C G T C G T A C G T A A C G T A C G T G T C A
p-value:1e-10
log p-value:-2.482e+01
Information Content per bp:1.815
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif97.1
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets50.2 +/- 30.1bp
Average Position of motif in Background53.4 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0020.1_Dlx1/Jaspar

Match Rank:1
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TAMTTACATC--
ATTAATTANCTCAN
 A C G T A C G T A C G T C G T A G T C A A C G T A C G T C G T A G T A C C T G A A C G T A T G C A C G T A C G T
T C G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A G A T C G A T C A C G T A G T C C T G A T A C G

PB0031.1_Hoxa3_1/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--TAMTTACATC--
GTTAATTANCTCNN
 A C G T A C G T A C G T C G T A G T C A A C G T A C G T C G T A G T A C C T G A A C G T A T G C A C G T A C G T
T C A G A G C T A G C T G T C A C G T A A C G T A C G T C T G A T A G C G A T C C G A T T A G C T G A C G C T A

PH0054.1_Hoxa7_1/Jaspar

Match Rank:3
Score:0.80
Offset:-6
Orientation:reverse strand
Alignment:------TAMTTACATC-
GNNNATTAATTAANNCG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A A C G T A C G T C G T A G T A C C T G A A C G T A T G C A C G T
C A T G T G A C G C A T G C A T C T G A C A G T G A C T G C T A C G T A G C A T C G A T C T G A G T C A G A T C C A G T A G T C A T C G

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-TAMTTACATC
YTAATTAVHT-
 A C G T A C G T C G T A G T C A A C G T A C G T C G T A G T A C C T G A A C G T A T G C
A G T C G A C T T C G A C G T A A C G T A C G T C T G A T C G A G C A T G C A T A C G T

PH0072.1_Hoxc8/Jaspar

Match Rank:5
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TAMTTACATC--
ACNNTAATTACNNCAN
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A A C G T A C G T C G T A G T A C C T G A A C G T A T G C A C G T A C G T
T G C A G T A C C T A G C A G T G A C T G T C A G C T A C A G T C A G T C T G A G T A C A G T C G A T C G T A C C G T A T G C A

PH0050.1_Hoxa3/Jaspar

Match Rank:6
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--TAMTTACATC--
ACTAATTANCNCNA
 A C G T A C G T A C G T C G T A G T C A A C G T A C G T C G T A G T A C C T G A A C G T A T G C A C G T A C G T
T C G A A G T C G A C T G T C A C G T A A C G T A C G T C T G A T A G C A G T C C A G T A G T C T C G A G T C A

mix-a/MA0621.1/Jaspar

Match Rank:7
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--TAMTTACATC
NCTAATTAANN-
 A C G T A C G T A C G T C G T A G T C A A C G T A C G T C G T A G T A C C T G A A C G T A T G C
G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T A C G T

PH0071.1_Hoxc6/Jaspar

Match Rank:8
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------TAMTTACATC-
NNTNATTAATTAATTTG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A A C G T A C G T C G T A G T A C C T G A A C G T A T G C A C G T
G C A T A C G T A G C T G C A T T G C A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A G C T C G A T G A C T T C A G

Alx1/MA0854.1/Jaspar

Match Rank:9
Score:0.77
Offset:-6
Orientation:reverse strand
Alignment:------TAMTTACATC-
GNNNATTAATTAATNCG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A A C G T A C G T C G T A G T A C C T G A A C G T A T G C A C G T
C T A G C A T G C A G T C T A G C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A G A C T C A G T A T G C C T A G

PH0010.1_Alx1_1/Jaspar

Match Rank:10
Score:0.77
Offset:-6
Orientation:reverse strand
Alignment:------TAMTTACATC-
GNNNATTAATTAATNCG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A A C G T A C G T C G T A G T A C C T G A A C G T A T G C A C G T
C T A G C A T G C A G T C T A G C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A G A C T C A G T A T G C C T A G