Information for 4-ACGCTTSRCK (Motif 3)

T G C A G T A C A T C G A G T C A C G T A C G T A T G C T C A G T G A C A C T G
Reverse Opposite:
T G A C A C T G A G T C T A C G T G C A T G C A C T A G T A G C C A T G A C G T
p-value:1e-10
log p-value:-2.362e+01
Information Content per bp:1.607
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif115.1
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets54.6 +/- 27.7bp
Average Position of motif in Background50.6 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-ACGCTTSRCK
CAAGCTT----
 A C G T T G C A G T A C A T C G A G T C A C G T A C G T A T G C T C A G T G A C A C T G
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:ACGCTTSRCK
--GCTTCC--
 T G C A G T A C A T C G A G T C A C G T A C G T A T G C T C A G T G A C A C T G
A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ACGCTTSRCK
-NGCTN----
 T G C A G T A C A T C G A G T C A C G T A C G T A T G C T C A G T G A C A C T G
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ACGCTTSRCK--
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C G T T G C A G T A C A T C G A G T C A C G T A C G T A T G C T C A G T G A C A C T G A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Pax6/MA0069.1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ACGCTTSRCK-
TTCACGCATGAGTT
 A C G T A C G T A C G T T G C A G T A C A T C G A G T C A C G T A C G T A T G C T C A G T G A C A C T G A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PAX5/MA0014.2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ACGCTTSRCK------
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A C G T T G C A G T A C A T C G A G T C A C G T A C G T A T G C T C A G T G A C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ACGCTTSRCK--
GTCATGCHTGRCTGS
 A C G T A C G T A C G T T G C A G T A C A T C G A G T C A C G T A C G T A T G C T C A G T G A C A C T G A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX1/MA0779.1/Jaspar

Match Rank:8
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------ACGCTTSRCK
NGCANTCATGCGTGACG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G T A C A T C G A G T C A C G T A C G T A T G C T C A G T G A C A C T G
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ACGCTTSRCK-
NNGTCGCGTGNCAC
 A C G T A C G T A C G T T G C A G T A C A T C G A G T C A C G T A C G T A T G C T C A G T G A C A C T G A C G T
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ACGCTTSRCK--
CAAAGGCGTGGCCAG
 A C G T A C G T A C G T T G C A G T A C A T C G A G T C A C G T A C G T A T G C T C A G T G A C A C T G A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G