Information for 6-GTGTTAAAGTAGA (Motif 4)

A C T G C G A T A C T G A C G T A C G T C G T A C G T A C G T A T A C G A G C T C G T A A C T G C G T A
Reverse Opposite:
A C G T G T A C A C G T C T G A A G T C A C G T A C G T A C G T G T C A C G T A A G T C C G T A A G T C
p-value:1e-13
log p-value:-3.108e+01
Information Content per bp:1.927
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.5 +/- 15.6bp
Average Position of motif in Background48.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBX2/MA0688.1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTGTTAAAGTAGA
AAGGTGTGAAA-----
 A C G T A C G T A C G T A C T G C G A T A C T G A C G T A C G T C G T A C G T A C G T A T A C G A G C T C G T A A C T G C G T A
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GTGTTAAAGTAGA
AGGTGTGAAA-----
 A C G T A C G T A C T G C G A T A C T G A C G T A C G T C G T A C G T A C G T A T A C G A G C T C G T A A C T G C G T A
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTGTTAAAGTAGA
AGGTGTTAAT-----
 A C G T A C G T A C T G C G A T A C T G A C G T A C G T C G T A C G T A C G T A T A C G A G C T C G T A A C T G C G T A
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTGTTAAAGTAGA
AAGGTGTKAA------
 A C G T A C G T A C G T A C T G C G A T A C T G A C G T A C G T C G T A C G T A C G T A T A C G A G C T C G T A A C T G C G T A
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------GTGTTAAAGTAGA
GAAAAGGTGTGAAAATT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T A C T G A C G T A C G T C G T A C G T A C G T A T A C G A G C T C G T A A C T G C G T A
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTGTTAAAGTAGA
AGGTGTGAAM-----
 A C G T A C G T A C T G C G A T A C T G A C G T A C G T C G T A C G T A C G T A T A C G A G C T C G T A A C T G C G T A
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTGTTAAAGTAGA
AAGGTGTGAAAAT---
 A C G T A C G T A C G T A C T G C G A T A C T G A C G T A C G T C G T A C G T A C G T A T A C G A G C T C G T A A C T G C G T A
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTGTTAAAGTAGA--
GGGGTCAAAGTCCAAT
 A C G T A C T G C G A T A C T G A C G T A C G T C G T A C G T A C G T A T A C G A G C T C G T A A C T G C G T A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTGTTAAAGTAGA
GAAAGTGAAAGT---
 A C G T A C G T A C T G C G A T A C T G A C G T A C G T C G T A C G T A C G T A T A C G A G C T C G T A A C T G C G T A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GTGTTAAAGTAGA
TAGGTGTGAAG-----
 A C G T A C G T A C G T A C T G C G A T A C T G A C G T A C G T C G T A C G T A C G T A T A C G A G C T C G T A A C T G C G T A
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T A C G T A C G T A C G T A C G T