Information for 1-CCGCCATTTT (Motif 2)

A G T C T G A C C A T G A G T C A G T C G C T A G A C T G A C T C A G T C A G T
Reverse Opposite:
G T C A G T C A C T G A C T G A C G A T C T A G T C A G G T A C A C T G T C A G
p-value:1e-90
log p-value:-2.092e+02
Information Content per bp:1.685
Number of Target Sequences with motif189.0
Percentage of Target Sequences with motif23.30%
Number of Background Sequences with motif1773.6
Percentage of Background Sequences with motif3.71%
Average Position of motif in Targets52.1 +/- 21.9bp
Average Position of motif in Background51.1 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCATTTT-
GCNGCCATCTTG
 A C G T A G T C T G A C C A T G A G T C A G T C G C T A G A C T G A C T C A G T C A G T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCATTTT-
GCCGCCATCTTG
 A C G T A G T C T G A C C A T G A G T C A G T C G C T A G A C T G A C T C A G T C A G T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CCGCCATTTT
GTCCGCCATTA-
 A C G T A C G T A G T C T G A C C A T G A G T C A G T C G C T A G A C T G A C T C A G T C A G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------CCGCCATTTT-
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G A C C A T G A G T C A G T C G C T A G A C T G A C T C A G T C A G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

E2F2/MA0864.1/Jaspar

Match Rank:5
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------CCGCCATTTT
AAAATGGCGCCATTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G A C C A T G A G T C A G T C G C T A G A C T G A C T C A G T C A G T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CCGCCATTTT-
---CCTTTGTT
 A G T C T G A C C A T G A G T C A G T C G C T A G A C T G A C T C A G T C A G T A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CCGCCATTTT---
---CCATTGTTYB
 A G T C T G A C C A T G A G T C A G T C G C T A G A C T G A C T C A G T C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

E2F3/MA0469.2/Jaspar

Match Rank:8
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------CCGCCATTTT-
AAAAATGGCGCCATTTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G A C C A T G A G T C A G T C G C T A G A C T G A C T C A G T C A G T A C G T
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCGCCATTTT--
--GCCATCTGTT
 A G T C T G A C C A T G A G T C A G T C G C T A G A C T G A C T C A G T C A G T A C G T A C G T
A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CCGCCATTTT-
---CCWTTGTY
 A G T C T G A C C A T G A G T C A G T C G C T A G A C T G A C T C A G T C A G T A C G T
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T