Information for 23-CGCAGAYGCAAAG (Motif 42)

G T A C A C T G A G T C C G T A C A T G C G T A A G C T A C T G A G T C C G T A C G T A C G T A A T C G
Reverse Opposite:
A T G C A C G T A C G T A C G T A C T G A G T C T C A G A C G T G A T C A C G T A C T G A G T C C A T G
p-value:1e-6
log p-value:-1.470e+01
Information Content per bp:1.920
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif9.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets69.5 +/- 20.6bp
Average Position of motif in Background31.7 +/- 18.0bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CGCAGAYGCAAAG
---ATATGCAAAT
 G T A C A C T G A G T C C G T A C A T G C G T A A G C T A C T G A G T C C G T A C G T A C G T A A T C G
A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CGCAGAYGCAAAG---
---ATATGCAAATNNN
 G T A C A C T G A G T C C G T A C A T G C G T A A G C T A C T G A G T C C G T A C G T A C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CGCAGAYGCAAAG
---TTATGCAAAT
 G T A C A C T G A G T C C G T A C A T G C G T A A G C T A C T G A G T C C G T A C G T A C G T A A T C G
A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

NHLH1/MA0048.2/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGCAGAYGCAAAG
CGCAGCTGCG---
 G T A C A C T G A G T C C G T A C A T G C G T A A G C T A C T G A G T C C G T A C G T A C G T A A T C G
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CGCAGAYGCAAAG---
----TATGCWAATBAV
 G T A C A C T G A G T C C G T A C A T G C G T A A G C T A C T G A G T C C G T A C G T A C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

EGR2/MA0472.2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CGCAGAYGCAAAG
ACGCCCACGCA---
 A C G T G T A C A C T G A G T C C G T A C A T G C G T A A G C T A C T G A G T C C G T A C G T A C G T A A T C G
G T C A A G T C C T A G A G T C T G A C A G T C T G C A A G T C C A T G A G T C C T G A A C G T A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGCAGAYGCAAAG
TGCGCAGGCGC----
 A C G T A C G T G T A C A C T G A G T C C G T A C A T G C G T A A G C T A C T G A G T C C G T A C G T A C G T A A T C G
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGCAGAYGCAAAG
NNVVCAGCTGBN---
 A C G T A C G T G T A C A C T G A G T C C G T A C A T G C G T A A G C T A C T G A G T C C G T A C G T A C G T A A T C G
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CGCAGAYGCAAAG
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A C G T G T A C A C T G A G T C C G T A C A T G C G T A A G C T A C T G A G T C C G T A C G T A C G T A A T C G
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGCAGAYGCAAAG
-CCAGACRSVB--
 G T A C A C T G A G T C C G T A C A T G C G T A A G C T A C T G A G T C C G T A C G T A C G T A A T C G
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T