Information for 3-GCATATCTTGCACATW (Motif 3)

C T A G G T A C C T G A C G A T C T G A A G C T A G T C C G A T C G A T A C T G G T A C C G T A A G T C C T G A A C G T C G A T
Reverse Opposite:
C G T A C G T A A G C T A C T G C G A T A C T G A G T C C G T A G C T A T A C G C T G A A G C T G C T A A G C T A C T G G A T C
p-value:1e-16
log p-value:-3.765e+01
Information Content per bp:1.705
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 22.4bp
Average Position of motif in Background56.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0044.1_Mtf1_1/Jaspar

Match Rank:1
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GCATATCTTGCACATW----
----NNTTTGCACACGGCCC
 C T A G G T A C C T G A C G A T C T G A A G C T A G T C C G A T C G A T A C T G G T A C C G T A A G T C C T G A A C G T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCATATCTTGCACATW---
--CAGATGTGCACATACGT
 C T A G G T A C C T G A C G A T C T G A A G C T A G T C C G A T C G A T A C T G G T A C C G T A A G T C C T G A A C G T C G A T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0104.1_Zscan4_1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCATATCTTGCACATW---
--TACATGTGCACATAAAA
 C T A G G T A C C T G A C G A T C T G A A G C T A G T C C G A T C G A T A C T G G T A C C G T A A G T C C T G A A C G T C G A T A C G T A C G T A C G T
A C G T A C G T C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GCATATCTTGCACATW-----
-----CGAAGCACACAAAATA
 C T A G G T A C C T G A C G A T C T G A A G C T A G T C C G A T C G A T A C T G G T A C C G T A A G T C C T G A A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

OLIG1/MA0826.1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCATATCTTGCACATW
AACATATGTT-------
 A C G T C T A G G T A C C T G A C G A T C T G A A G C T A G T C C G A T C G A T A C T G G T A C C G T A A G T C C T G A A C G T C G A T
C T G A T G C A G T A C C G T A A C G T T G C A G A C T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCATATCTTGCACATW
ANCATATGGT-------
 A C G T C T A G G T A C C T G A C G A T C T G A A G C T A G T C C G A T C G A T A C T G G T A C C G T A A G T C C T G A A C G T C G A T
C T G A T C G A T G A C C T G A A C G T C T G A G A C T A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Atoh1/MA0461.2/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCATATCTTGCACATW
ANCATATGTT-------
 A C G T C T A G G T A C C T G A C G A T C T G A A G C T A G T C C G A T C G A T A C T G G T A C C G T A A G T C C T G A A C G T C G A T
C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OLIG3/MA0827.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCATATCTTGCACATW
ANCATATGGT-------
 A C G T C T A G G T A C C T G A C G A T C T G A A G C T A G T C C G A T C G A T A C T G G T A C C G T A A G T C C T G A A C G T C G A T
C T G A T G C A G T A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCATATCTTGCACATW
GACATATGTT-------
 A C G T C T A G G T A C C T G A C G A T C T G A A G C T A G T C C G A T C G A T A C T G G T A C C G T A A G T C C T G A A C G T C G A T
C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OLIG2/MA0678.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCATATCTTGCACATW
ACCATATGGT-------
 A C G T C T A G G T A C C T G A C G A T C T G A A G C T A G T C C G A T C G A T A C T G G T A C C G T A A G T C C T G A A C G T C G A T
C T G A T G A C G T A C C T G A A C G T C G T A G A C T A C T G A C T G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T