Information for 13-RGGKKAAAAMCCA (Motif 20)

C T A G A C T G C T A G A C T G A C G T C G T A C G T A C G T A C G T A G T A C A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T G T C A G T A C A G T C A G T C A G T C
p-value:1e-11
log p-value:-2.559e+01
Information Content per bp:1.878
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.8 +/- 24.4bp
Average Position of motif in Background40.1 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-RGGKKAAAAMCCA--
GGGGTCAAAGTCCAAT
 A C G T C T A G A C T G C T A G A C T G A C G T C G T A C G T A C G T A C G T A G T A C A G T C A G T C C G T A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RGGKKAAAAMCCA
GGGGGAATCCCC-
 C T A G A C T G C T A G A C T G A C G T C G T A C G T A C G T A C G T A G T A C A G T C A G T C C G T A
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:RGGKKAAAAMCCA
---GGAAANCCCC
 C T A G A C T G C T A G A C T G A C G T C G T A C G T A C G T A C G T A G T A C A G T C A G T C C G T A
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:RGGKKAAAAMCCA-
--GGGAAATCCCCN
 C T A G A C T G C T A G A C T G A C G T C G T A C G T A C G T A C G T A G T A C A G T C A G T C C G T A A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RGGKKAAAAMCCA
AGGGGAATCCCCT
 C T A G A C T G C T A G A C T G A C G T C G T A C G T A C G T A C G T A G T A C A G T C A G T C C G T A
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:RGGKKAAAAMCCA
---GGAAATCCCC
 C T A G A C T G C T A G A C T G A C G T C G T A C G T A C G T A C G T A G T A C A G T C A G T C C G T A
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:RGGKKAAAAMCCA
---GGAAATTCCC
 C T A G A C T G C T A G A C T G A C G T C G T A C G T A C G T A C G T A G T A C A G T C A G T C C G T A
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RGGKKAAAAMCCA
TAGGGCAAAGGTCA
 A C G T C T A G A C T G C T A G A C T G A C G T C G T A C G T A C G T A C G T A G T A C A G T C A G T C C G T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-RGGKKAAAAMCCA
TGGGGCAAAGGTCA
 A C G T C T A G A C T G C T A G A C T G A C G T C G T A C G T A C G T A C G T A G T A C A G T C A G T C C G T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---RGGKKAAAAMCCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T C T A G A C T G C T A G A C T G A C G T C G T A C G T A C G T A C G T A G T A C A G T C A G T C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A