Information for 6-AGTAATGGCG (Motif 9)

C T G A C A T G A G C T C T G A T G C A G C A T C T A G T A C G G T A C T A C G
Reverse Opposite:
A T G C C A T G A T G C G A T C C G T A A C G T G A C T T C G A G T A C G A C T
p-value:1e-10
log p-value:-2.505e+01
Information Content per bp:1.664
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif5.20%
Number of Background Sequences with motif712.5
Percentage of Background Sequences with motif1.49%
Average Position of motif in Targets52.2 +/- 21.0bp
Average Position of motif in Background50.9 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:AGTAATGGCG---
--TAATGGCGGNC
 C T G A C A T G A G C T C T G A T G C A G C A T C T A G T A C G G T A C T A C G A C G T A C G T A C G T
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

BARX1/MA0875.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AGTAATGGCG
-NTAATTGN-
 C T G A C A T G A G C T C T G A T G C A G C A T C T A G T A C G G T A C T A C G
A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGTAATGGCG
GKTAATGR--
 C T G A C A T G A G C T C T G A T G C A G C A T C T A G T A C G G T A C T A C G
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGTAATGGCG
GTTAATGGCC
 C T G A C A T G A G C T C T G A T G C A G C A T C T A G T A C G G T A C T A C G
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGTAATGGCG
-CTAATKGV-
 C T G A C A T G A G C T C T G A T G C A G C A T C T A G T A C G G T A C T A C G
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T

BSX/MA0876.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGTAATGGCG
-NTAATTGG-
 C T G A C A T G A G C T C T G A T G C A G C A T C T A G T A C G G T A C T A C G
A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGTAATGGCG
-TTAATTAN-
 C T G A C A T G A G C T C T G A T G C A G C A T C T A G T A C G G T A C T A C G
A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGTAATGGCG
TGATTRATGGCY
 A C G T A C G T C T G A C A T G A G C T C T G A T G C A G C A T C T A G T A C G G T A C T A C G
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGTAATGGCG-
-NTAATKGTTT
 C T G A C A T G A G C T C T G A T G C A G C A T C T A G T A C G G T A C T A C G A C G T
A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T

PH0063.1_Hoxb8/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGTAATGGCG---
TTTATTAATTGCNNGN
 A C G T A C G T A C G T C T G A C A T G A G C T C T G A T G C A G C A T C T A G T A C G G T A C T A C G A C G T A C G T A C G T
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T