Information for 12-TAGTTTAAGG (Motif 23)

A C G T C G T A A C T G A C G T A C G T A G C T G C T A C T G A C T A G T A C G
Reverse Opposite:
A T G C A G T C A G C T C G A T C T G A G T C A C G T A A G T C A C G T C G T A
p-value:1e-7
log p-value:-1.670e+01
Information Content per bp:1.856
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif40.9
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets51.6 +/- 25.0bp
Average Position of motif in Background50.3 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TAGTTTAAGG---
-AGGTCAAGGTCA
 A C G T C G T A A C T G A C G T A C G T A G C T G C T A C T G A C T A G T A C G A C G T A C G T A C G T
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TAGTTTAAGG
CTATTTTTGG-
 A C G T A C G T C G T A A C T G A C G T A C G T A G C T G C T A C T G A C T A G T A C G
A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TAGTTTAAGG
ACTAGTTAAC--
 A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G C T G C T A C T G A C T A G T A C G
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TAGTTTAAGG
KCTATTTTTRGH
 A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G C T G C T A C T G A C T A G T A C G
C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TAGTTTAAGG---
-AGGTCAAGGTCA
 A C G T C G T A A C T G A C G T A C G T A G C T G C T A C T G A C T A G T A C G A C G T A C G T A C G T
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

MEF2C/MA0497.1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TAGTTTAAGG--
TTCTATTTTTAGNNN
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G C T G C T A C T G A C T A G T A C G A C G T A C G T
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TAGTTTAAGG
GCTATTTTTAGC
 A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G C T G C T A C T G A C T A G T A C G
C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TAGTTTAAGG
TGGTTTCAGT
 A C G T C G T A A C T G A C G T A C G T A G C T G C T A C T G A C T A G T A C G
G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

PH0168.1_Hnf1b/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TAGTTTAAGG--
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G C T G C T A C T G A C T A G T A C G A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

Foxq1/MA0040.1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TAGTTTAAGG
TATTGTTTATT-
 A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G C T G C T A C T G A C T A G T A C G
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T