Information for 3-YCTGAYCTCA (Motif 11)

A G C T A G T C A C G T C T A G C T G A A G T C A T G C G A C T A T G C C T G A
Reverse Opposite:
G A C T A T C G C T G A A T C G C T A G A G C T A G T C C G T A C T A G C T G A
p-value:1e-11
log p-value:-2.614e+01
Information Content per bp:1.690
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif8.24%
Number of Background Sequences with motif1170.8
Percentage of Background Sequences with motif2.73%
Average Position of motif in Targets53.5 +/- 24.8bp
Average Position of motif in Background49.4 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:YCTGAYCTCA
--TGACCTYA
 A G C T A G T C A C G T C T A G C T G A A G T C A T G C G A C T A T G C C T G A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:YCTGAYCTCA
--TGACCYCT
 A G C T A G T C A C G T C T A G C T G A A G T C A T G C G A C T A T G C C T G A
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:YCTGAYCTCA
--TGACCT--
 A G C T A G T C A C G T C T A G C T G A A G T C A T G C G A C T A T G C C T G A
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:YCTGAYCTCA
-GTGACCTT-
 A G C T A G T C A C G T C T A G C T G A A G T C A T G C G A C T A T G C C T G A
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--YCTGAYCTCA-
CNNTTGACCTTTG
 A C G T A C G T A G C T A G T C A C G T C T A G C T G A A G T C A T G C G A C T A T G C C T G A A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---YCTGAYCTCA----
TGTCGTGACCCCTTAAT
 A C G T A C G T A C G T A G C T A G T C A C G T C T A G C T G A A G T C A T G C G A C T A T G C C T G A A C G T A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:YCTGAYCTCA--
--TGACCTTGAT
 A G C T A G T C A C G T C T A G C T G A A G T C A T G C G A C T A T G C C T G A A C G T A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:YCTGAYCTCA-
-CTGACCTTTG
 A G C T A G T C A C G T C T A G C T G A A G T C A T G C G A C T A T G C C T G A A C G T
A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---YCTGAYCTCA----
NNNNTTGACCCCTNNNN
 A C G T A C G T A C G T A G C T A G T C A C G T C T A G C T G A A G T C A T G C G A C T A T G C C T G A A C G T A C G T A C G T A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----YCTGAYCTCA
TGACCTTGACCT--
 A C G T A C G T A C G T A C G T A G C T A G T C A C G T C T A G C T G A A G T C A T G C G A C T A T G C C T G A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T