Information for 9-GCCAGACATGRCACGG (Motif 10)

A T C G G T A C A G T C C G T A A T C G C T G A G T A C C G T A C G A T A C T G C T A G T A G C C T G A A T G C C A T G A T C G
Reverse Opposite:
A T G C G A T C T A C G A G C T A T C G G A T C A G T C C G T A C G A T A C T G G A C T A T G C C G A T A C T G A C T G T A G C
p-value:1e-12
log p-value:-2.777e+01
Information Content per bp:1.707
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.8 +/- 21.2bp
Average Position of motif in Background51.1 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GCCAGACATGRCACGG
CAAATCCAGACATCACA---
 A C G T A C G T A C G T A C G T A T C G G T A C A G T C C G T A A T C G C T G A G T A C C G T A C G A T A C T G C T A G T A G C C T G A A T G C C A T G A T C G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCCAGACATGRCACGG
ATGCCAGACN--------
 A C G T A C G T A T C G G T A C A G T C C G T A A T C G C T G A G T A C C G T A C G A T A C T G C T A G T A G C C T G A A T G C C A T G A T C G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCCAGACATGRCACGG
-CCAGACAG-------
 A T C G G T A C A G T C C G T A A T C G C T G A G T A C C G T A C G A T A C T G C T A G T A G C C T G A A T G C C A T G A T C G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCCAGACATGRCACGG
-CCAGACRSVB-----
 A T C G G T A C A G T C C G T A A T C G C T G A G T A C C G T A C G A T A C T G C T A G T A G C C T G A A T G C C A T G A T C G
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCCAGACATGRCACGG
AGGTGHCAGACA--------
 A C G T A C G T A C G T A C G T A T C G G T A C A G T C C G T A A T C G C T G A G T A C C G T A C G A T A C T G C T A G T A G C C T G A A T G C C A T G A T C G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCCAGACATGRCACGG
-BCAGACWA-------
 A T C G G T A C A G T C C G T A A T C G C T G A G T A C C G T A C G A T A C T G C T A G T A G C C T G A A T G C C A T G A T C G
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCAGACATGRCACGG
-CCATATATGGNA---
 A T C G G T A C A G T C C G T A A T C G C T G A G T A C C G T A C G A T A C T G C T A G T A G C C T G A A T G C C A T G A T C G
A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GCCAGACATGRCACGG
SCAGYCADGCATGAC----
 A C G T A C G T A C G T A T C G G T A C A G T C C G T A A T C G C T G A G T A C C G T A C G A T A C T G C T A G T A G C C T G A A T G C C A T G A T C G
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGACATGRCACGG
TCCCAGMCRAGCCCC--
 A C G T A T C G G T A C A G T C C G T A A T C G C T G A G T A C C G T A C G A T A C T G C T A G T A G C C T G A A T G C C A T G A T C G
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GCCAGACATGRCACGG
AGGTGNCAGACAG-------
 A C G T A C G T A C G T A C G T A T C G G T A C A G T C C G T A A T C G C T G A G T A C C G T A C G A T A C T G C T A G T A G C C T G A A T G C C A T G A T C G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T