Information for 4-GGAAATCCCC (Motif 5)

C A T G T A C G C T G A G T C A G C T A C G A T A G T C T G A C G T A C G T A C
Reverse Opposite:
C A T G C A T G A C T G T C A G G C T A C G A T C A G T G A C T A T G C G T A C
p-value:1e-18
log p-value:-4.182e+01
Information Content per bp:1.653
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif7.64%
Number of Background Sequences with motif971.7
Percentage of Background Sequences with motif2.06%
Average Position of motif in Targets45.8 +/- 25.7bp
Average Position of motif in Background49.9 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GGAAATCCCC
GGAAATCCCC
 C A T G T A C G C T G A G T C A G C T A C G A T A G T C T G A C G T A C G T A C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-GGAAATCCCC-
GGGAAATCCCCN
 A C G T C A T G T A C G C T G A G T C A G C T A C G A T A G T C T G A C G T A C G T A C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:GGAAATCCCC
GGAAATTCCC
 C A T G T A C G C T G A G T C A G C T A C G A T A G T C T G A C G T A C G T A C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:GGAAATCCCC
GGAAANCCCC
 C A T G T A C G C T G A G T C A G C T A C G A T A G T C T G A C G T A C G T A C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GGAAATCCCC
GGAAATTCCC
 C A T G T A C G C T G A G T C A G C T A C G A T A G T C T G A C G T A C G T A C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--GGAAATCCCC
GGGGGAATCCCC
 A C G T A C G T C A T G T A C G C T G A G T C A G C T A C G A T A G T C T G A C G T A C G T A C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--GGAAATCCCC-
AGGGGATTCCCCT
 A C G T A C G T C A T G T A C G C T G A G T C A G C T A C G A T A G T C T G A C G T A C G T A C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GGAAATCCCC-
AGGGGAATCCCCT
 A C G T A C G T C A T G T A C G C T G A G T C A G C T A C G A T A G T C T G A C G T A C G T A C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:GGAAATCCCC-
-----TCCCCA
 C A T G T A C G C T G A G T C A G C T A C G A T A G T C T G A C G T A C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GGAAATCCCC--
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A C G T C A T G T A C G C T G A G T C A G C T A C G A T A G T C T G A C G T A C G T A C A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T