Information for 2-GCCACCAGGTGGCGSY (Motif 2)

C A T G T A G C G T A C T C G A A T G C G T A C G C T A A C T G T C A G A C G T A C T G A C T G G T A C C T A G T A G C A G C T
Reverse Opposite:
T C G A A T C G G A T C A C T G G T A C G T A C T G C A A G T C G T A C C G A T C A T G T A C G A G C T A C T G A T C G G T A C
p-value:1e-53
log p-value:-1.224e+02
Information Content per bp:1.656
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif7.64%
Number of Background Sequences with motif233.1
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets50.9 +/- 21.0bp
Average Position of motif in Background54.3 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:GCCACCAGGTGGCGSY----
GCCASCAGGGGGCGCYVNNG
 C A T G T A G C G T A C T C G A A T G C G T A C G C T A A C T G T C A G A C G T A C T G A C T G G T A C C T A G T A G C A G C T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--GCCACCAGGTGGCGSY-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T C A T G T A G C G T A C T C G A A T G C G T A C G C T A A C T G T C A G A C G T A C T G A C T G G T A C C T A G T A G C A G C T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--GCCACCAGGTGGCGSY--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T C A T G T A G C G T A C T C G A A T G C G T A C G C T A A C T G T C A G A C G T A C T G A C T G G T A C C T A G T A G C A G C T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCCACCAGGTGGCGSY
---AACAGATGGC---
 C A T G T A G C G T A C T C G A A T G C G T A C G C T A A C T G T C A G A C G T A C T G A C T G G T A C C T A G T A G C A G C T
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCCACCAGGTGGCGSY---
--NNNAAGGGGGCGGGNNN
 C A T G T A G C G T A C T C G A A T G C G T A C G C T A A C T G T C A G A C G T A C T G A C T G G T A C C T A G T A G C A G C T A C G T A C G T A C G T
A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCCACCAGGTGGCGSY
-VNAVCAGCTGGC---
 C A T G T A G C G T A C T C G A A T G C G T A C G C T A A C T G T C A G A C G T A C T G A C T G G T A C C T A G T A G C A G C T
A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCCACCAGGTGGCGSY
----CAAGATGGCGGC
 C A T G T A G C G T A C T C G A A T G C G T A C G C T A A C T G T C A G A C G T A C T G A C T G G T A C C T A G T A G C A G C T
A C G T A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCACCAGGTGGCGSY
DCHCAGCAGGRGGCC--
 A C G T C A T G T A G C G T A C T C G A A T G C G T A C G C T A A C T G T C A G A C G T A C T G A C T G G T A C C T A G T A G C A G C T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCCACCAGGTGGCGSY
--SDGCAGGTGCNS--
 C A T G T A G C G T A C T C G A A T G C G T A C G C T A A C T G T C A G A C G T A C T G A C T G G T A C C T A G T A G C A G C T
A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCACCAGGTGGCGSY
-NNVVCAGCTGBN---
 C A T G T A G C G T A C T C G A A T G C G T A C G C T A A C T G T C A G A C G T A C T G A C T G G T A C C T A G T A G C A G C T
A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T