Information for 3-RCKAGCTCATARA (Motif 5)

T C G A A G T C A C G T C G T A A C T G A G T C A C G T A T G C C G T A C G A T C G T A C T G A C G T A
Reverse Opposite:
A C G T A G C T A C G T C G T A A C G T A T C G C G T A A C T G A G T C A C G T T G A C A C T G A G C T
p-value:1e-16
log p-value:-3.727e+01
Information Content per bp:1.887
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.7 +/- 24.7bp
Average Position of motif in Background13.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:RCKAGCTCATARA----
-AAAGCTCGTAAAATTT
 T C G A A G T C A C G T C G T A A C T G A G T C A C G T A T G C C G T A C G A T C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.68
Offset:4
Orientation:forward strand
Alignment:RCKAGCTCATARA--
----GCTCGTAAAAA
 T C G A A G T C A C G T C G T A A C T G A G T C A C G T A T G C C G T A C G A T C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:RCKAGCTCATARA----
-AAACCTCGTAAAATTT
 T C G A A G T C A C G T C G T A A C T G A G T C A C G T A T G C C G T A C G A T C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:RCKAGCTCATARA-
----CCYMATAAAA
 T C G A A G T C A C G T C G T A A C T G A G T C A C G T A T G C C G T A C G A T C G T A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PH0151.1_Pou6f1_1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:RCKAGCTCATARA----
NNNACCTCATTATCNTN
 T C G A A G T C A C G T C G T A A C T G A G T C A C G T A T G C C G T A C G A T C G T A C T G A C G T A A C G T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

POU6F2/MA0793.1/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:RCKAGCTCATARA
---AGCTCATTAT
 T C G A A G T C A C G T C G T A A C T G A G T C A C G T A T G C C G T A C G A T C G T A C T G A C G T A
A C G T A C G T A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.63
Offset:4
Orientation:forward strand
Alignment:RCKAGCTCATARA-
----NCYAATAAAA
 T C G A A G T C A C G T C G T A A C T G A G T C A C G T A T G C C G T A C G A T C G T A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.61
Offset:5
Orientation:forward strand
Alignment:RCKAGCTCATARA--
-----GTCGTAAAAT
 T C G A A G T C A C G T C G T A A C T G A G T C A C G T A T G C C G T A C G A T C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:RCKAGCTCATARA---
----NGYCATAAAWCH
 T C G A A G T C A C G T C G T A A C T G A G T C A C G T A T G C C G T A C G A T C G T A C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.61
Offset:5
Orientation:forward strand
Alignment:RCKAGCTCATARA--
-----CCAATAAAAA
 T C G A A G T C A C G T C G T A A C T G A G T C A C G T A T G C C G T A C G A T C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A