Information for 7-AGTAMCAGRSMTG (Motif 8)

C G T A A C T G A C G T T C G A G T C A A G T C C G T A A C T G C T G A A T C G G T C A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A T G C A G C T A G T C A C G T A C T G A C G T A C G T C G T A A G T C A C G T
p-value:1e-13
log p-value:-3.089e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.3 +/- 24.0bp
Average Position of motif in Background39.8 +/- 6.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGTAMCAGRSMTG-----
GAAGTANCACGAATNMRAGT
 A C G T A C G T C G T A A C T G A C G T T C G A G T C A A G T C C G T A A C T G C T G A A T C G G T C A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGTAMCAGRSMTG
AGGTGHCAGACA--
 A C G T C G T A A C T G A C G T T C G A G T C A A G T C C G T A A C T G C T G A A T C G G T C A A C G T A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGTAMCAGRSMTG
TGAGTGACAGSC---
 A C G T A C G T C G T A A C T G A C G T T C G A G T C A A G T C C G T A A C T G C T G A A T C G G T C A A C G T A C T G
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGTAMCAGRSMTG
AGGGTAACAGC----
 A C G T A C G T C G T A A C T G A C G T T C G A G T C A A G T C C G T A A C T G C T G A A T C G G T C A A C G T A C T G
C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AGTAMCAGRSMTG
SCCTAGCAACAG-----
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T T C G A G T C A A G T C C G T A A C T G C T G A A T C G G T C A A C G T A C T G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:6
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AGTAMCAGRSMTG
AAAAATAACAAACGG-
 A C G T A C G T A C G T C G T A A C T G A C G T T C G A G T C A A G T C C G T A A C T G C T G A A T C G G T C A A C G T A C T G
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---AGTAMCAGRSMTG
NTGATTGACAGN----
 A C G T A C G T A C G T C G T A A C T G A C G T T C G A G T C A A G T C C G T A A C T G C T G A A T C G G T C A A C G T A C T G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGTAMCAGRSMTG
-ATGCCAGACN--
 C G T A A C T G A C G T T C G A G T C A A G T C C G T A A C T G C T G A A T C G G T C A A C G T A C T G
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AGTAMCAGRSMTG
AGGTGNCAGACAG-
 A C G T C G T A A C T G A C G T T C G A G T C A A G T C C G T A A C T G C T G A A T C G G T C A A C G T A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AGTAMCAGRSMTG
AATGTATCAAT----
 A C G T A C G T C G T A A C T G A C G T T C G A G T C A A G T C C G T A A C T G C T G A A T C G G T C A A C G T A C T G
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T A C G T A C G T A C G T