Information for 3-CGCAGCCCGGGAGACA (Motif 5)

A G T C A C T G A G T C C G T A A C T G A T G C A G T C A T G C A T C G A C T G A C T G G T C A A C T G G T C A A G T C C G T A
Reverse Opposite:
A C G T C T A G A C G T A G T C A C G T A G T C A G T C T A G C A T C G A C T G A T C G A G T C A C G T A C T G A G T C A C T G
p-value:1e-11
log p-value:-2.643e+01
Information Content per bp:1.920
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.8 +/- 25.5bp
Average Position of motif in Background58.6 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CGCAGCCCGGGAGACA-
--NNNACCGAGAGTNNN
 A G T C A C T G A G T C C G T A A C T G A T G C A G T C A T G C A T C G A C T G A C T G G T C A A C T G G T C A A G T C C G T A A C G T
A C G T A C G T A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCCCGGGAGACA
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A A C T G A T G C A G T C A T G C A T C G A C T G A C T G G T C A A C T G G T C A A G T C C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:3
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CGCAGCCCGGGAGACA
---TGCCCTGAGGGCA
 A G T C A C T G A G T C C G T A A C T G A T G C A G T C A T G C A T C G A C T G A C T G G T C A A C T G G T C A A G T C C G T A
A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:4
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CGCAGCCCGGGAGACA
---TGCCCTGAGGGCA
 A G T C A C T G A G T C C G T A A C T G A T G C A G T C A T G C A T C G A C T G A C T G G T C A A C T G G T C A A G T C C G T A
A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CGCAGCCCGGGAGACA
NCGCAGCGGGGGGTC--
 A C G T A G T C A C T G A G T C C G T A A C T G A T G C A G T C A T G C A T C G A C T G A C T G G T C A A C T G G T C A A G T C C G T A
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCCCGGGAGACA
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A A C T G A T G C A G T C A T G C A T C G A C T G A C T G G T C A A C T G G T C A A G T C C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:7
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:CGCAGCCCGGGAGACA
---TGCCCNNAGGGCA
 A G T C A C T G A G T C C G T A A C T G A T G C A G T C A T G C A T C G A C T G A C T G G T C A A C T G G T C A A G T C C G T A
A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CGCAGCCCGGGAGACA
CACAGCAGGGGG----
 A G T C A C T G A G T C C G T A A C T G A T G C A G T C A T G C A T C G A C T G A C T G G T C A A C T G G T C A A G T C C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CGCAGCCCGGGAGACA
DCHCAGCAGGRGGCC--
 A C G T A G T C A C T G A G T C C G T A A C T G A T G C A G T C A T G C A T C G A C T G A C T G G T C A A C T G G T C A A G T C C G T A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CGCAGCCCGGGAGACA
--CAGCC---------
 A G T C A C T G A G T C C G T A A C T G A T G C A G T C A T G C A T C G A C T G A C T G G T C A A C T G G T C A A G T C C G T A
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T