Information for 2-GCCAGACTCCAAG (Motif 3)

A T C G A G T C G T A C G T C A A C T G C G T A G T A C G A C T A G T C A G T C G T C A C G T A A C T G
Reverse Opposite:
T A G C A C G T A C G T A C T G A C T G C T G A A C T G G C A T A G T C C A G T C A T G A C T G A T G C
p-value:1e-11
log p-value:-2.702e+01
Information Content per bp:1.785
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif51.8
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets53.1 +/- 24.1bp
Average Position of motif in Background44.3 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0203.1_Zfp691_2/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCAGACTCCAAG---
TACGAGACTCCTCTAAC
 A C G T A T C G A G T C G T A C G T C A A C T G C G T A G T A C G A C T A G T C A G T C G T C A C G T A A C T G A C G T A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCCAGACTCCAAG
ATGCCAGACN-----
 A C G T A C G T A T C G A G T C G T A C G T C A A C T G C G T A G T A C G A C T A G T C A G T C G T C A C G T A A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GCCAGACTCCAAG-------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A T C G A G T C G T A C G T C A A C T G C G T A G T A C G A C T A G T C A G T C G T C A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGACTCCAAG---
NTNNCGTATCCAAGTNN
 A C G T A T C G A G T C G T A C G T C A A C T G C G T A G T A C G A C T A G T C A G T C G T C A C G T A A C T G A C G T A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCCAGACTCCAAG
-CCAGACAG----
 A T C G A G T C G T A C G T C A A C T G C G T A G T A C G A C T A G T C A G T C G T C A C G T A A C T G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCCAGACTCCAAG--
GGCAAAAGTCCAATAA
 A C G T A T C G A G T C G T A C G T C A A C T G C G T A G T A C G A C T A G T C A G T C G T C A C G T A A C T G A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCCAGACTCCAAG
-CCAGACRSVB--
 A T C G A G T C G T A C G T C A A C T G C G T A G T A C G A C T A G T C A G T C G T C A C G T A A C T G
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCCAGACTCCAAG
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A T C G A G T C G T A C G T C A A C T G C G T A G T A C G A C T A G T C A G T C G T C A C G T A A C T G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCCAGACTCCAAG
TGGCACCATGCCAA-
 A C G T A C G T A T C G A G T C G T A C G T C A A C T G C G T A G T A C G A C T A G T C A G T C G T C A C G T A A C T G
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCCAGACTCCAAG---
AGCTCGGCGCCAAAAGC
 A C G T A T C G A G T C G T A C G T C A A C T G C G T A G T A C G A C T A G T C A G T C G T C A C G T A A C T G A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C