Information for 15-CCCTTAGCGG (Motif 26)

A T G C G T A C A G T C A G C T C G A T C T G A A C T G A T G C A C T G T C A G
Reverse Opposite:
A G T C G T A C A T C G G T A C A G C T C G T A C T G A A C T G A C T G A T C G
p-value:1e-8
log p-value:-1.928e+01
Information Content per bp:1.778
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif27.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets48.4 +/- 30.1bp
Average Position of motif in Background47.3 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTAGCGG
BCMATTAG---
 A C G T A T G C G T A C A G T C A G C T C G A T C T G A A C T G A T G C A C T G T C A G
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCCTTAGCGG
ACCACTTAA---
 A C G T A C G T A T G C G T A C A G T C A G C T C G A T C T G A A C T G A T G C A C T G T C A G
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCCTTAGCGG
ACCACTTAA---
 A C G T A C G T A T G C G T A C A G T C A G C T C G A T C T G A A C T G A T G C A C T G T C A G
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCCTTAGCGG
AACCTTATAT-
 A C G T A T G C G T A C A G T C A G C T C G A T C T G A A C T G A T G C A C T G T C A G
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CCCTTAGCGG--
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T A C G T A C G T A T G C G T A C A G T C A G C T C G A T C T G A A C T G A T G C A C T G T C A G A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCCTTAGCGG
NCCTTATCTG
 A T G C G T A C A G T C A G C T C G A T C T G A A C T G A T G C A C T G T C A G
A G C T A G T C A T G C A C G T A C G T C G T A A C G T A G T C C G A T A T C G

Barhl1/MA0877.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTAGCGG
NNCAATTANN--
 A C G T A C G T A T G C G T A C A G T C A G C T C G A T C T G A A C T G A T G C A C T G T C A G
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCCTTAGCGG
GCACTTAA---
 A C G T A T G C G T A C A G T C A G C T C G A T C T G A A C T G A T G C A C T G T C A G
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCTTAGCGG-
TGCCCTGAGGGCA
 A C G T A C G T A T G C G T A C A G T C A G C T C G A T C T G A A C T G A T G C A C T G T C A G A C G T
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CCCTTAGCGG-
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T A C A G T C A G C T C G A T C T G A A C T G A T G C A C T G T C A G A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T