Information for 5-CCCAGTCCTTTCTTAG (Motif 6)

A G T C A G T C A G T C T G C A A T C G A C G T A G T C A G T C A G C T A C G T A C G T A G T C A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C G A C T T C G A C G T A C T A G C G T A C G T A C T G A A C T G A C T G C G T A A T G C A C G T A C T G A C T G A C T G
p-value:1e-13
log p-value:-3.159e+01
Information Content per bp:1.911
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.3 +/- 22.1bp
Average Position of motif in Background61.0 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCCAGTCCTTTCTTAG
-NNGCACCTTTCTCC-
 A G T C A G T C A G T C T G C A A T C G A C G T A G T C A G T C A G C T A C G T A C G T A G T C A C G T A C G T C G T A A C T G
A C G T A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CCCAGTCCTTTCTTAG
------CCTTTGTT--
 A G T C A G T C A G T C T G C A A T C G A C G T A G T C A G T C A G C T A C G T A C G T A G T C A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCCAGTCCTTTCTTAG---
--TNNTCCTTTGTTCTNNT
 A G T C A G T C A G T C T G C A A T C G A C G T A G T C A G T C A G C T A C G T A C G T A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C G T
A C G T A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCCAGTCCTTTCTTAG---
--NNNTCCTTTGTTCTNNN
 A G T C A G T C A G T C T G C A A T C G A C G T A G T C A G T C A G C T A C G T A C G T A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C G T
A C G T A C G T C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCCAGTCCTTTCTTAG---
---ANTCCTTTGTCTNNNN
 A G T C A G T C A G T C T G C A A T C G A C G T A G T C A G T C A G C T A C G T A C G T A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CCCAGTCCTTTCTTAG
------CCWTTGTY--
 A G T C A G T C A G T C T G C A A T C G A C G T A G T C A G T C A G C T A C G T A C G T A G T C A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:7
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:CCCAGTCCTTTCTTAG----
--------TTTCTNAGAAAN
 A G T C A G T C A G T C T G C A A T C G A C G T A G T C A G T C A G C T A C G T A C G T A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CCCAGTCCTTTCTTAG
------CCTTTGTTTT
 A G T C A G T C A G T C T G C A A T C G A C G T A G T C A G T C A G C T A C G T A C G T A G T C A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

PB0107.1_Ascl2_2/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CCCAGTCCTTTCTTAG
CTATCCCCGCCCTATT----
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C T G C A A T C G A C G T A G T C A G T C A G C T A C G T A C G T A G T C A C G T A C G T C G T A A C T G
A T G C G A C T T G C A C G A T G T A C T A G C G T A C T G A C C T A G A G T C G A T C G A T C A G C T C T G A A C G T G A C T A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CCCAGTCCTTTCTTAG
GAGCCCTTGTCCCTAA----
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C T G C A A T C G A C G T A G T C A G T C A G C T A C G T A C G T A G T C A C G T A C G T C G T A A C T G
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G A C G T A C G T A C G T A C G T