Information for 4-AASCCATARAGCT (Motif 10)

T C G A C T G A T A G C A G T C G T A C C G T A C A G T C G T A C T A G C G T A C A T G G T A C A C G T
Reverse Opposite:
C G T A A C T G G T A C G C A T G A T C G C A T G T C A C G A T C A T G C T A G A T C G A G C T A G C T
p-value:1e-12
log p-value:-2.815e+01
Information Content per bp:1.651
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif4.11%
Number of Background Sequences with motif395.2
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets45.9 +/- 24.1bp
Average Position of motif in Background51.8 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AASCCATARAGCT
AAGCCATAAAA--
 T C G A C T G A T A G C A G T C G T A C C G T A C A G T C G T A C T A G C G T A C A T G G T A C A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AASCCATARAGCT--
AGAGCCATAAAATTCG
 A C G T T C G A C T G A T A G C A G T C G T A C C G T A C A G T C G T A C T A G C G T A C A T G G T A C A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AASCCATARAGCT
AAACCACAGAN--
 T C G A C T G A T A G C A G T C G T A C C G T A C A G T C G T A C T A G C G T A C A T G G T A C A C G T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:4
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AASCCATARAGCT-
AAAGGTAATAAAATTT
 A C G T A C G T T C G A C T G A T A G C A G T C G T A C C G T A C A G T C G T A C T A G C G T A C A T G G T A C A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0108.1_Msx3/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AASCCATARAGCT
CAAAACCAATTAATTT
 A C G T A C G T A C G T T C G A C T G A T A G C A G T C G T A C C G T A C A G T C G T A C T A G C G T A C A T G G T A C A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AASCCATARAGCT
-GGCCATAAATCA
 T C G A C T G A T A G C A G T C G T A C C G T A C A G T C G T A C T A G C G T A C A T G G T A C A C G T
A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AASCCATARAGCT
--GCAATAAAA--
 T C G A C T G A T A G C A G T C G T A C C G T A C A G T C G T A C T A G C G T A C A T G G T A C A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AASCCATARAGCT
AAAAACCAATTAAGAA
 A C G T A C G T A C G T T C G A C T G A T A G C A G T C G T A C C G T A C A G T C G T A C T A G C G T A C A T G G T A C A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AASCCATARAGCT
AACCGANA-----
 T C G A C T G A T A G C A G T C G T A C C G T A C A G T C G T A C T A G C G T A C A T G G T A C A C G T
C G T A C G T A T A G C A G T C C T A G G C T A G T A C G C T A A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AASCCATARAGCT
-NGYCATAAAWCH
 T C G A C T G A T A G C A G T C G T A C C G T A C A G T C G T A C T A G C G T A C A T G G T A C A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A