Information for 12-CCTCCAGTTGCCA (Motif 14)

A G T C A G T C A C G T A G T C A G T C C G T A A C T G C G A T A C G T A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G C T A G A G T C G T C A C G T A A G T C A C G T C T A G A C T G C G T A A C T G A C T G
p-value:1e-8
log p-value:-1.965e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.2 +/- 12.2bp
Average Position of motif in Background67.7 +/- 14.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCTCCAGTTGCCA---
----CTGTTGCTAGGS
 A G T C A G T C A C G T A G T C A G T C C G T A A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTCCAGTTGCCA----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A G T C C G T A A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCTCCAGTTGCCA---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A G T C C G T A A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.57
Offset:7
Orientation:forward strand
Alignment:CCTCCAGTTGCCA--
-------TTGCCAAG
 A G T C A G T C A C G T A G T C A G T C C G T A A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCTCCAGTTGCCA------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C A C G T A G T C A G T C C G T A A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CCTCCAGTTGCCA--
------CGTGCCAAG
 A G T C A G T C A C G T A G T C A G T C C G T A A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CCTCCAGTTGCCA-------
------GTTGCCATGGNAAC
 A G T C A G T C A C G T A G T C A G T C C G T A A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

SCRT1/MA0743.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCTCCAGTTGCCA
ANCCACCTGTTGCNC
 A C G T A C G T A G T C A G T C A C G T A G T C A G T C C G T A A C T G C G A T A C G T A C T G A G T C A G T C C G T A
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:CCTCCAGTTGCCA-
--------TGCCAA
 A G T C A G T C A C G T A G T C A G T C C G T A A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CCTCCAGTTGCCA-----
---NNCGTTGCTATGGNN
 A G T C A G T C A C G T A G T C A G T C C G T A A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A