Information for 6-RCYCAMAGAAATW (Motif 9)

C T G A A T G C A G C T A G T C C G T A G T A C C G T A A C T G C G T A C G T A G T C A A C G T C G A T
Reverse Opposite:
C G T A C G T A A C G T A C G T A C G T A G T C A C G T A C T G A C G T A C T G C T G A A T C G G A C T
p-value:1e-14
log p-value:-3.242e+01
Information Content per bp:1.873
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.1 +/- 32.6bp
Average Position of motif in Background67.3 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-RCYCAMAGAAATW
TACTGGAAAAAAAA
 A C G T C T G A A T G C A G C T A G T C C G T A G T A C C G T A A C T G C G T A C G T A G T C A A C G T C G A T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----RCYCAMAGAAATW
AAACAGACAAAGGAAT-
 A C G T A C G T A C G T A C G T C T G A A T G C A G C T A G T C C G T A G T A C C G T A A C T G C G T A C G T A G T C A A C G T C G A T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:forward strand
Alignment:RCYCAMAGAAATW
-----CACTAATT
 C T G A A T G C A G C T A G T C C G T A G T A C C G T A A C T G C G T A C G T A G T C A A C G T C G A T
A C G T A C G T A C G T A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----RCYCAMAGAAATW
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C G T C T G A A T G C A G C T A G T C C G T A G T A C C G T A A C T G C G T A C G T A G T C A A C G T C G A T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

PB0169.1_Sox15_2/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RCYCAMAGAAATW---
-TTGAATGAAATTCGA
 C T G A A T G C A G C T A G T C C G T A G T A C C G T A A C T G C G T A C G T A G T C A A C G T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RCYCAMAGAAATW
AAACCACAGAN---
 A C G T C T G A A T G C A G C T A G T C C G T A G T A C C G T A A C T G C G T A C G T A G T C A A C G T C G A T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:RCYCAMAGAAATW
TTTCTNAGAAAN-
 C T G A A T G C A G C T A G T C C G T A G T A C C G T A A C T G C G T A C G T A G T C A A C G T C G A T
A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T A C G T

PB0177.1_Sox7_2/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----RCYCAMAGAAATW----
NNCNNNCNCANACAATTAGNAC
 A C G T A C G T A C G T A C G T A C G T C T G A A T G C A G C T A G T C C G T A G T A C C G T A A C T G C G T A C G T A G T C A A C G T C G A T A C G T A C G T A C G T A C G T
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C

PB0082.1_Tcf3_1/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----RCYCAMAGAAATW
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C G T C T G A A T G C A G C T A G T C C G T A G T A C C G T A A C T G C G T A C G T A G T C A A C G T C G A T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

PB0116.1_Elf3_2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:RCYCAMAGAAATW----
GTTCAAAAAAAAAATTC
 C T G A A T G C A G C T A G T C C G T A G T A C C G T A A C T G C G T A C G T A G T C A A C G T C G A T A C G T A C G T A C G T A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C