Information for 8-CAGAACTCAGACA (Motif 7)

A G T C C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A A C T G C G T A G T A C C G T A
Reverse Opposite:
A C G T A C T G A C G T A G T C C G A T C T A G C G T A A C T G A C G T A C G T A G T C A C G T A C T G
p-value:1e-10
log p-value:-2.523e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.6 +/- 21.2bp
Average Position of motif in Background27.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGAACTCAGACA-----
-CAAATCCAGACATCACA
 A G T C C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A A C T G C G T A G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CAGAACTCAGACA-
------BCAGACWA
 A G T C C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A A C T G C G T A G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CAGAACTCAGACA-
------CCAGACAG
 A G T C C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A A C T G C G T A G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CAGAACTCAGACA---
------CCAGACRSVB
 A G T C C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A A C T G C G T A G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGAACTCAGACA
CGGAAGTGAAAC-
 A G T C C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A A C T G C G T A G T A C C G T A
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGAACTCAGACA
AAGCACTTAA---
 A G T C C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A A C T G C G T A G T A C C G T A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:7
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------CAGAACTCAGACA
TATCATTAGAACGCT----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A A C T G C G T A G T A C C G T A
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T A C G T A C G T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CAGAACTCAGACA-
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A A C T G C G T A G T A C C G T A A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CAGAACTCAGACA
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A A C T G C G T A G T A C C G T A
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Hoxa9/MA0594.1/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CAGAACTCAGACA
GCCATAAATCA----
 A C G T A C G T A G T C C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A A C T G C G T A G T A C C G T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T