Information for 17-CTGACATGAATAA (Motif 18)

A T G C A C G T A C T G C G T A A G T C T G C A A C G T A C T G C G T A C G T A C G A T C G T A C G T A
Reverse Opposite:
C G A T A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C T G A C G T A G T C C G T A A T C G
p-value:1e-8
log p-value:-1.964e+01
Information Content per bp:1.932
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.4 +/- 8.6bp
Average Position of motif in Background60.1 +/- 17.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CTGACATGAATAA
NNTNTCATGAATGT
 A C G T A T G C A C G T A C T G C G T A A G T C T G C A A C G T A C T G C G T A C G T A C G A T C G T A C G T A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.68
Offset:5
Orientation:forward strand
Alignment:CTGACATGAATAA--
-----ATGAATATTC
 A T G C A C G T A C T G C G T A A G T C T G C A A C G T A C T G C G T A C G T A C G A T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.65
Offset:5
Orientation:forward strand
Alignment:CTGACATGAATAA--
-----ATGMATATDC
 A T G C A C G T A C T G C G T A A G T C T G C A A C G T A C T G C G T A C G T A C G A T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTGACATGAATAA----
NTTNTATGAATGTGNNC
 A T G C A C G T A C T G C G T A A G T C T G C A A C G T A C T G C G T A C G T A C G A T C G T A C G T A A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGACATGAATAA-----
---TCATGAATWATTCAT
 A T G C A C G T A C T G C G T A A G T C T G C A A C G T A C T G C G T A C G T A C G A T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGACATGAATAA
TTGACAG------
 A T G C A C G T A C T G C G T A A G T C T G C A A C G T A C T G C G T A C G T A C G A T C G T A C G T A
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTGACATGAATAA
-TGACCTTGAT--
 A T G C A C G T A C T G C G T A A G T C T G C A A C G T A C T G C G T A C G T A C G A T C G T A C G T A
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CTGACATGAATAA----
-----ATGCATAATTCA
 A T G C A C G T A C T G C G T A A G T C T G C A A C G T A C T G C G T A C G T A C G A T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

BATF::JUN/MA0462.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTGACATGAATAA
--GAAATGACTCA
 A T G C A C G T A C T G C G T A A G T C T G C A A C G T A C T G C G T A C G T A C G A T C G T A C G T A
A C G T A C G T C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A

Hoxa9/MA0594.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTGACATGAATAA
--GCCATAAATCA
 A T G C A C G T A C T G C G T A A G T C T G C A A C G T A C T G C G T A C G T A C G A T C G T A C G T A
A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A