Information for 4-NGAGGAGAGAGYGACT (Motif 9)

G T C A C A T G G T C A A C T G A T C G T C G A T A C G C T G A A C T G C G T A A T C G A G C T C T A G C T G A A G T C G C A T
Reverse Opposite:
C G T A T C A G A G C T G A T C T C G A A T G C C G A T T A G C A G C T A T G C A G C T A T G C T G A C C A G T G A T C C A G T
p-value:1e-6
log p-value:-1.393e+01
Information Content per bp:1.553
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif15.62%
Number of Background Sequences with motif964.2
Percentage of Background Sequences with motif2.10%
Average Position of motif in Targets50.9 +/- 22.7bp
Average Position of motif in Background50.8 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:NGAGGAGAGAGYGACT--
------NTGATTGACAGN
 G T C A C A T G G T C A A C T G A T C G T C G A T A C G C T G A A C T G C G T A A T C G A G C T C T A G C T G A A G T C G C A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-NGAGGAGAGAGYGACT---
NANTGGAAAAANTGAGTCAN
 A C G T G T C A C A T G G T C A A C T G A T C G T C G A T A C G C T G A A C T G C G T A A T C G A G C T C T A G C T G A A G T C G C A T A C G T A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:NGAGGAGAGAGYGACT
--------NCGTGACN
 G T C A C A T G G T C A A C T G A T C G T C G A T A C G C T G A A C T G C G T A A T C G A G C T C T A G C T G A A G T C G C A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:NGAGGAGAGAGYGACT--
------BTGABTGACAGS
 G T C A C A T G G T C A A C T G A T C G T C G A T A C G C T G A A C T G C G T A A T C G A G C T C T A G C T G A A G T C G C A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

ESR2/MA0258.2/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:NGAGGAGAGAGYGACT-
--AGGNCANNGTGACCT
 G T C A C A T G G T C A A C T G A T C G T C G A T A C G C T G A A C T G C G T A A T C G A G C T C T A G C T G A A G T C G C A T A C G T
A C G T A C G T C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:NGAGGAGAGAGYGACT
-NAGGTCACNNTGACC
 G T C A C A T G G T C A A C T G A T C G T C G A T A C G C T G A A C T G C G T A A T C G A G C T C T A G C T G A A G T C G C A T
A C G T T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:NGAGGAGAGAGYGACT---
-------TGAGTGACAGSC
 G T C A C A T G G T C A A C T G A T C G T C G A T A C G C T G A A C T G C G T A A T C G A G C T C T A G C T G A A G T C G C A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:NGAGGAGAGAGYGACT--
--TGCGGAGTGGGACTGG
 G T C A C A T G G T C A A C T G A T C G T C G A T A C G C T G A A C T G C G T A A T C G A G C T C T A G C T G A A G T C G C A T A C G T A C G T
A C G T A C G T A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:NGAGGAGAGAGYGACT
------CGGAGC----
 G T C A C A T G G T C A A C T G A T C G T C G A T A C G C T G A A C T G C G T A A T C G A G C T C T A G C T G A A G T C G C A T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:NGAGGAGAGAGYGACT--
-CAGGTCACCGTGACCTT
 G T C A C A T G G T C A A C T G A T C G T C G A T A C G C T G A A C T G C G T A A T C G A G C T C T A G C T G A A G T C G C A T A C G T A C G T
A C G T T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T