Information for 3-CTGCCGTCAA (Motif 7)

T A G C A C G T A C T G A G T C A T G C A C T G A G C T T A G C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G C T G A G T A C A T C G C T A G A G T C T C G A A C T G
p-value:1e-7
log p-value:-1.680e+01
Information Content per bp:1.753
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif7.81%
Number of Background Sequences with motif68.1
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets37.4 +/- 24.3bp
Average Position of motif in Background50.3 +/- 36.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTGCCGTCAA----
TAAAGTCGTAAAACGT
 A C G T A C G T T A G C A C G T A C T G A G T C A T G C A C T G A G C T T A G C C G T A C T G A A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTGCCGTCAA-----
CAAGGTCGTAAAATCTT
 A C G T A C G T T A G C A C G T A C T G A G T C A T G C A C T G A G C T T A G C C G T A C T G A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

PH0076.1_Hoxd11/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CTGCCGTCAA-----
TAAGGTCGTAAAATCCT
 A C G T A C G T T A G C A C G T A C T G A G T C A T G C A C T G A G C T T A G C C G T A C T G A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CTGCCGTCAA----
TAAAGTCGTAAAATAG
 A C G T A C G T T A G C A C G T A C T G A G T C A T G C A C T G A G C T T A G C C G T A C T G A A C G T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

HOXC11/MA0651.1/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTGCCGTCAA--
-GGTCGTAAAAT
 T A G C A C G T A C T G A G T C A T G C A C T G A G C T T A G C C G T A C T G A A C G T A C G T
A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

PH0067.1_Hoxc12/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CTGCCGTCAA-----
TTAGGTCGTAAAATTTC
 A C G T A C G T T A G C A C G T A C T G A G T C A T G C A C T G A G C T T A G C C G T A C T G A A C G T A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

HOXC12/MA0906.1/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTGCCGTCAA--
-GGTCGTAAAAA
 T A G C A C G T A C T G A G T C A T G C A C T G A G C T T A G C C G T A C T G A A C G T A C G T
A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

PH0047.1_Hoxa11/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTGCCGTCAA----
TAAAGTCGTAAAACAT
 A C G T A C G T T A G C A C G T A C T G A G T C A T G C A C T G A G C T T A G C C G T A C T G A A C G T A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTGCCGTCAA---
-GGTCGTAAAATT
 T A G C A C G T A C T G A G T C A T G C A C T G A G C T T A G C C G T A C T G A A C G T A C G T A C G T
A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTGCCGTCAA--
--GTCGTAAAAA
 T A G C A C G T A C T G A G T C A T G C A C T G A G C T T A G C C G T A C T G A A C G T A C G T
A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A