Information for 1-TGGGACTYYTGCCCAR (Motif 1)

A C G T A T C G A C T G T C A G C G T A A G T C A C G T A G C T A G T C A G C T C A T G A G T C G T A C G A T C C G T A C T A G
Reverse Opposite:
A G T C C G A T C A T G A C T G C T A G G T A C C T G A C T A G C T G A G T C A A C T G C G A T A G T C T A G C A T G C C G T A
p-value:1e-11
log p-value:-2.744e+01
Information Content per bp:1.701
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif7.81%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.4 +/- 30.0bp
Average Position of motif in Background59.2 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TGGGACTYYTGCCCAR
--TGACCTTTGCCCTA
 A C G T A T C G A C T G T C A G C G T A A G T C A C G T A G C T A G T C A G C T C A T G A G T C G T A C G A T C C G T A C T A G
A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.55
Offset:9
Orientation:reverse strand
Alignment:TGGGACTYYTGCCCAR---
---------TGCCCAGNHW
 A C G T A T C G A C T G T C A G C G T A A G T C A C G T A G C T A G T C A G C T C A T G A G T C G T A C G A T C C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGGGACTYYTGCCCAR-
--TGACCTTTGCCCTAN
 A C G T A T C G A C T G T C A G C G T A A G T C A C G T A G C T A G T C A G C T C A T G A G T C G T A C G A T C C G T A C T A G A C G T
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TGGGACTYYTGCCCAR
--TGACCTTTGCCCCA
 A C G T A T C G A C T G T C A G C G T A A G T C A C G T A G C T A G T C A G C T C A T G A G T C G T A C G A T C C G T A C T A G
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TGGGACTYYTGCCCAR
NNATTGGACTTTNGNN---
 A C G T A C G T A C G T A C G T A T C G A C T G T C A G C G T A A G T C A C G T A G C T A G T C A G C T C A T G A G T C G T A C G A T C C G T A C T A G
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.51
Offset:7
Orientation:forward strand
Alignment:TGGGACTYYTGCCCAR-
-------GGTGCCAAGT
 A C G T A T C G A C T G T C A G C G T A A G T C A C G T A G C T A G T C A G C T C A T G A G T C G T A C G A T C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.50
Offset:8
Orientation:forward strand
Alignment:TGGGACTYYTGCCCAR
--------TTGCCAAG
 A C G T A T C G A C T G T C A G C G T A A G T C A C G T A G C T A G T C A G C T C A T G A G T C G T A C G A T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

PB0203.1_Zfp691_2/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--TGGGACTYYTGCCCAR
TACGAGACTCCTCTAAC-
 A C G T A C G T A C G T A T C G A C T G T C A G C G T A A G T C A C G T A G C T A G T C A G C T C A T G A G T C G T A C G A T C C G T A C T A G
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.49
Offset:8
Orientation:forward strand
Alignment:TGGGACTYYTGCCCAR-
--------ATGCCCACC
 A C G T A T C G A C T G T C A G C G T A A G T C A C G T A G C T A G T C A G C T C A T G A G T C G T A C G A T C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

MTF1/MA0863.1/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:TGGGACTYYTGCCCAR
-GTGCCGTGTGCAAA-
 A C G T A T C G A C T G T C A G C G T A A G T C A C G T A G C T A G T C A G C T C A T G A G T C G T A C G A T C C G T A C T A G
A C G T C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A A C G T