Information for 4-GCGGCCTGAGAAA (Motif 9)

C T A G A G T C A C T G T A C G A T G C A T G C C G A T T C A G T G C A C T A G T C G A T G C A C T G A
Reverse Opposite:
A G C T A C G T A C G T G A T C A C G T A G T C C G T A A T C G A T C G A T G C A G T C C T A G A G T C
p-value:1e-9
log p-value:-2.204e+01
Information Content per bp:1.674
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif5.14%
Number of Background Sequences with motif267.6
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets42.1 +/- 22.5bp
Average Position of motif in Background48.5 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------GCGGCCTGAGAAA
GGGGCCGAGGCCTG-----
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C T G T A C G A T G C A T G C C G A T T C A G T G C A C T A G T C G A T G C A C T G A
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCGGCCTGAGAAA
-AGGCCTAG----
 C T A G A G T C A C T G T A C G A T G C A T G C C G A T T C A G T G C A C T A G T C G A T G C A C T G A
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCGGCCTGAGAAA-
----CSTGGGAAAD
 C T A G A G T C A C T G T A C G A T G C A T G C C G A T T C A G T G C A C T A G T C G A T G C A C T G A A C G T
A C G T A C G T A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCGGCCTGAGAAA
-AGGCCTNG----
 C T A G A G T C A C T G T A C G A T G C A T G C C G A T T C A G T G C A C T A G T C G A T G C A C T G A
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GCGGCCTGAGAAA---------
--NNCCTGNAAAAAAAAAAAAA
 C T A G A G T C A C T G T A C G A T G C A T G C C G A T T C A G T G C A C T A G T C G A T G C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCGGCCTGAGAAA-
----CCYMATAAAA
 C T A G A G T C A C T G T A C G A T G C A T G C C G A T T C A G T G C A C T A G T C G A T G C A C T G A A C G T
A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCGGCCTGAGAAA---------
--NNCCTGNAAAAAAAAAAAAA
 C T A G A G T C A C T G T A C G A T G C A T G C C G A T T C A G T G C A C T A G T C G A T G C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCGGCCTGAGAAA
--AGCCTCAGGCA
 C T A G A G T C A C T G T A C G A T G C A T G C C G A T T C A G T G C A C T A G T C G A T G C A C T G A
A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCGGCCTGAGAAA
WTGSCCTSAGGS-
 C T A G A G T C A C T G T A C G A T G C A T G C C G A T T C A G T G C A C T A G T C G A T G C A C T G A
G C T A G A C T C A T G A T G C A G T C A G T C G A C T T A C G C T G A C T A G A C T G T A G C A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GCGGCCTGAGAAA
--AGCCTCAGGCA
 C T A G A G T C A C T G T A C G A T G C A T G C C G A T T C A G T G C A C T A G T C G A T G C A C T G A
A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A