Information for 4-CCTGCTYYACGACACT (Motif 4)

G A T C G T A C A C G T C T A G T A G C C G A T G A T C A G T C C T G A G A T C T C A G T G C A A T G C C G T A A T G C C G A T
Reverse Opposite:
C G T A A T C G C G A T A T C G A C G T A G T C C T A G A G C T T C A G C T A G C G T A A T C G A G T C C G T A A C T G C T A G
p-value:1e-13
log p-value:-3.019e+01
Information Content per bp:1.676
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.6 +/- 22.0bp
Average Position of motif in Background14.3 +/- 2.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCTYYACGACACT
GYCTGGYYTNTGTCA--
 A C G T G A T C G T A C A C G T C T A G T A G C C G A T G A T C A G T C C T G A G A T C T C A G T G C A A T G C C G T A A T G C C G A T
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:CCTGCTYYACGACACT---
---------MRSCACTYAA
 G A T C G T A C A C G T C T A G T A G C C G A T G A T C A G T C C T G A G A T C T C A G T G C A A T G C C G T A A T G C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.52
Offset:10
Orientation:forward strand
Alignment:CCTGCTYYACGACACT----
----------RSCACTYRAG
 G A T C G T A C A C G T C T A G T A G C C G A T G A T C A G T C C T G A G A T C T C A G T G C A A T G C C G T A A T G C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.51
Offset:9
Orientation:forward strand
Alignment:CCTGCTYYACGACACT---
---------AASCACTCAA
 G A T C G T A C A C G T C T A G T A G C C G A T G A T C A G T C C T G A G A T C T C A G T G C A A T G C C G T A A T G C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

NKX2-8/MA0673.1/Jaspar

Match Rank:5
Score:0.49
Offset:11
Orientation:forward strand
Alignment:CCTGCTYYACGACACT----
-----------CCACTTGAA
 G A T C G T A C A C G T C T A G T A G C C G A T G A T C A G T C C T G A G A T C T C A G T G C A A T G C C G T A A T G C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.49
Offset:10
Orientation:forward strand
Alignment:CCTGCTYYACGACACT----
----------ACCACTTGAA
 G A T C G T A C A C G T C T A G T A G C C G A T G A T C A G T C C T G A G A T C T C A G T G C A A T G C C G T A A T G C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.49
Offset:10
Orientation:reverse strand
Alignment:CCTGCTYYACGACACT----
----------NSCACTYVAV
 G A T C G T A C A C G T C T A G T A G C C G A T G A T C A G T C C T G A G A T C T C A G T G C A A T G C C G T A A T G C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

PH0066.1_Hoxc11/Jaspar

Match Rank:8
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:CCTGCTYYACGACACT-
-NNNTTTTACGACNTTN
 G A T C G T A C A C G T C T A G T A G C C G A T G A T C A G T C C T G A G A T C T C A G T G C A A T G C C G T A A T G C C G A T A C G T
A C G T G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

NKX3-2/MA0122.2/Jaspar

Match Rank:9
Score:0.48
Offset:10
Orientation:forward strand
Alignment:CCTGCTYYACGACACT---
----------ACCACTTAA
 G A T C G T A C A C G T C T A G T A G C C G A T G A T C A G T C C T G A G A T C T C A G T G C A A T G C C G T A A T G C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.48
Offset:9
Orientation:forward strand
Alignment:CCTGCTYYACGACACT---
---------AAGCACTTAA
 G A T C G T A C A C G T C T A G T A G C C G A T G A T C A G T C C T G A G A T C T C A G T G C A A T G C C G T A A T G C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A