Information for 1-KBTGCTTTACGGC (Motif 1)

C A G T A T G C A C G T A T C G A G T C A C G T A C G T A C G T C T G A A G T C A C T G C T A G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C T G A G C T G T C A C G T A C G T A T C A G T A G C T G C A T A C G G T C A
p-value:1e-40
log p-value:-9.277e+01
Information Content per bp:1.721
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif11.99%
Number of Background Sequences with motif171.6
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets49.7 +/- 25.7bp
Average Position of motif in Background49.6 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0066.1_Hoxc11/Jaspar

Match Rank:1
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:KBTGCTTTACGGC----
-NNNTTTTACGACNTTN
 C A G T A T G C A C G T A T C G A G T C A C G T A C G T A C G T C T G A A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:KBTGCTTTACGGC----
-ANNTTTTACGACNTNN
 C A G T A T G C A C G T A T C G A G T C A C G T A C G T A C G T C T G A A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

HOXC12/MA0906.1/Jaspar

Match Rank:3
Score:0.81
Offset:3
Orientation:reverse strand
Alignment:KBTGCTTTACGGC-
---NTTTTACGACC
 C A G T A T G C A C G T A T C G A G T C A C G T A C G T A C G T C T G A A G T C A C T G C T A G A G T C A C G T
A C G T A C G T A C G T C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

HOXD12/MA0873.1/Jaspar

Match Rank:4
Score:0.81
Offset:3
Orientation:reverse strand
Alignment:KBTGCTTTACGGC-
---NTTTTACGACT
 C A G T A T G C A C G T A T C G A G T C A C G T A C G T A C G T C T G A A G T C A C T G C T A G A G T C A C G T
A C G T A C G T A C G T C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T

PH0047.1_Hoxa11/Jaspar

Match Rank:5
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:KBTGCTTTACGGC----
-NNGTTTTACGACTTTA
 C A G T A T G C A C G T A T C G A G T C A C G T A C G T A C G T C T G A A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:KBTGCTTTACGGC-
---NTTTTACGACC
 C A G T A T G C A C G T A T C G A G T C A C G T A C G T A C G T C T G A A G T C A C T G C T A G A G T C A C G T
A C G T A C G T A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:KBTGCTTTACGGC----
ANNATTTTACGACNTNA
 C A G T A T G C A C G T A T C G A G T C A C G T A C G T A C G T C T G A A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A

PH0077.1_Hoxd12/Jaspar

Match Rank:8
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:KBTGCTTTACGGC----
NNNATTTTACGACNNTN
 C A G T A T G C A C G T A T C G A G T C A C G T A C G T A C G T C T G A A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0067.1_Hoxc12/Jaspar

Match Rank:9
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:KBTGCTTTACGGC----
GNNNTTTTACGACCTNA
 C A G T A T G C A C G T A T C G A G T C A C G T A C G T A C G T C T G A A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:KBTGCTTTACGGC-
--DGWTTTATGRCN
 C A G T A T G C A C G T A T C G A G T C A C G T A C G T A C G T C T G A A G T C A C T G C T A G A G T C A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C