Information for 22-GCGTCTGGGC (Motif 28)

A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C G T A C C G T A A C T G C G T A A G T C A C T G A G T C
p-value:1e-5
log p-value:-1.366e+01
Information Content per bp:1.961
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets42.8 +/- 22.4bp
Average Position of motif in Background42.9 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GCGTCTGGGC
VBSYGTCTGG--
 A C G T A C G T A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCGTCTGGGC
CTGTCTGG--
 A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GCGTCTGGGC-
-WDNCTGGGCA
 A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C A C G T
A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GCGTCTGGGC---
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

NRF1/MA0506.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCGTCTGGGC-
GCGCCTGCGCA
 A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C A C G T
T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A

SMAD3/MA0795.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCGTCTGGGC-
-CGTCTAGACA
 A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C A C G T
A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCGTCTGGGC----
NNGCGTGTGTGCNGCN
 A C G T A C G T A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCGTCTGGGC--
TCACCTCTGGGCAG
 A C G T A C G T A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C A C G T A C G T
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCGTCTGGGC--
---TNNGGGCAG
 A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCGTCTGGGC--
GGNGCGNCTGTTNNN
 A C G T A C G T A C G T A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T