Information for 6-CCGCAGAGGG (Motif 12)

A T G C A T G C T A C G T G A C G C T A C T A G G C T A T C A G T A C G C A T G
Reverse Opposite:
G T A C A T G C A G T C C G A T A G T C C G A T A C T G A T G C T A C G T A C G
p-value:1e-13
log p-value:-3.083e+01
Information Content per bp:1.683
Number of Target Sequences with motif76.0
Percentage of Target Sequences with motif9.04%
Number of Background Sequences with motif1634.8
Percentage of Background Sequences with motif3.41%
Average Position of motif in Targets51.4 +/- 25.5bp
Average Position of motif in Background50.3 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX3/MA0684.1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCGCAGAGGG
AAACCGCAAA---
 A C G T A C G T A C G T A T G C A T G C T A C G T G A C G C T A C T A G G C T A T C A G T A C G C A T G
G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCGCAGAGGG--------
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A T G C A T G C T A C G T G A C G C T A C T A G G C T A T C A G T A C G C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCGCAGAGGG
GTCCCCAGGGGA
 A C G T A C G T A T G C A T G C T A C G T G A C G C T A C T A G G C T A T C A G T A C G C A T G
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCGCAGAGGG--
--CCAGACRSVB
 A T G C A T G C T A C G T G A C G C T A C T A G G C T A T C A G T A C G C A T G A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCGCAGAGGG
CACAGCAGGGGG
 A C G T A C G T A T G C A T G C T A C G T G A C G C T A C T A G G C T A T C A G T A C G C A T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCGCAGAGGG
AAACCACAGAN--
 A C G T A C G T A C G T A T G C A T G C T A C G T G A C G C T A C T A G G C T A T C A G T A C G C A T G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCGCAGAGGG--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A T G C A T G C T A C G T G A C G C T A C T A G G C T A T C A G T A C G C A T G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCGCAGAGGG-
-AACAGATGGT
 A T G C A T G C T A C G T G A C G C T A C T A G G C T A T C A G T A C G C A T G A C G T
A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCGCAGAGGG--
NCGCAGCGGGGGGTC
 A C G T A C G T A C G T A T G C A T G C T A C G T G A C G C T A C T A G G C T A T C A G T A C G C A T G A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCGCAGAGGG--
NCNCAGCGGGGGGTC
 A C G T A C G T A C G T A T G C A T G C T A C G T G A C G C T A C T A G G C T A T C A G T A C G C A T G A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C