Information for 10-GCCTGCTGCACAG (Motif 12)

A C T G A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C C T G A G T A C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G C T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G G T A C
p-value:1e-10
log p-value:-2.384e+01
Information Content per bp:1.921
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.8 +/- 23.0bp
Average Position of motif in Background68.3 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GCCTGCTGCACAG
TNTCCTGCTGTGNNG
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C C T G A G T A C C G T A A C T G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCCTGCTGCACAG
TCNCCTGCTGNGNNN
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C C T G A G T A C C G T A A C T G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCCTGCTGCACAG
NNTCCTGCTGTGNNN
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C C T G A G T A C C G T A A C T G
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCCTGCTGCACAG
-CCTGCTGAGH--
 A C T G A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C C T G A G T A C C G T A A C T G
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCCTGCTGCACAG
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C C T G A G T A C C G T A A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCTGCTGCACAG
CCCCCTGCTGTG---
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C C T G A G T A C C G T A A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCCTGCTGCACAG
ANTGCCTGAGGCAAN-
 A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C C T G A G T A C C G T A A C T G
C G T A C A G T G A C T C A T G G A T C G A T C C A G T T A C G T G C A C A T G C A T G A G T C C G T A G T C A G A C T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCCTGCTGCACAG
CCACCTGTTGCAT--
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C C T G A G T A C C G T A A C T G
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGCTGCACAG
TGCCTGAGGCN---
 A C G T A C T G A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C C T G A G T A C C G T A A C T G
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GCCTGCTGCACAG
ANCCACCTGTTGCNC--
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C C T G A G T A C C G T A A C T G
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C A C G T A C G T