Information for 3-CCCAATCCTCAGC (Motif 9)

A G T C A G T C A G T C C G T A C G T A A C G T A G T C A G T C C G A T A G T C G T C A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C T G C G T A A C T G A C T G G T C A A C G T A C G T A C T G A C T G A C T G
p-value:1e-10
log p-value:-2.425e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.2 +/- 8.4bp
Average Position of motif in Background19.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCCAATCCTCAGC
-SSAATCCACANN
 A G T C A G T C A G T C C G T A C G T A A C G T A G T C A G T C C G A T A G T C G T C A A C T G A G T C
A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCCAATCCTCAGC
TCCAATCCACA--
 A G T C A G T C A G T C C G T A C G T A A C G T A G T C A G T C C G A T A G T C G T C A A C T G A G T C
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCCAATCCTCAGC-
CGACCCAATCAACGGTG
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A C G T A A C G T A G T C A G T C C G A T A G T C G T C A A C T G A G T C A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

Gfi1b/MA0483.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CCCAATCCTCAGC-
---AAATCACAGCA
 A G T C A G T C A G T C C G T A C G T A A C G T A G T C A G T C C G A T A G T C G T C A A C T G A G T C A C G T
A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CCCAATCCTCAGC
---AAACCACANN
 A G T C A G T C A G T C C G T A C G T A A C G T A G T C A G T C C G A T A G T C G T C A A C T G A G T C
A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCCAATCCTCAGC-
---AAACCACAGAN
 A G T C A G T C A G T C C G T A C G T A A C G T A G T C A G T C C G A T A G T C G T C A A C T G A G T C A C G T
A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCCAATCCTCAGC
-CTAATCCTCTT-
 A G T C A G T C A G T C C G T A C G T A A C G T A G T C A G T C C G A T A G T C G T C A A C T G A G T C
A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CCCAATCCTCAGC
---AAACCACAGC
 A G T C A G T C A G T C C G T A C G T A A C G T A G T C A G T C C G A T A G T C G T C A A C T G A G T C
A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCCAATCCTCAGC
--NAAACCACAG-
 A G T C A G T C A G T C C G T A C G T A A C G T A G T C A G T C C G A T A G T C G T C A A C T G A G T C
A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCCAATCCTCAGC
GCTAATCC-----
 A G T C A G T C A G T C C G T A C G T A A C G T A G T C A G T C C G A T A G T C G T C A A C T G A G T C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T