Information for 12-CCAATGGAGC (Motif 21)

A G T C A G T C T G C A C G T A C G A T A T C G A C T G C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C G C A T A G T C A T G C G C T A G C A T A C G T A C T G C T A G
p-value:1e-6
log p-value:-1.565e+01
Information Content per bp:1.845
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif131.2
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets51.9 +/- 25.4bp
Average Position of motif in Background46.4 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CCAATGGAGC
----CGGAGC
 A G T C A G T C T G C A C G T A C G A T A T C G A C T G C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCAATGGAGC
AGCCAATCGG--
 A C G T A C G T A G T C A G T C T G C A C G T A C G A T A T C G A C T G C G T A A C T G A G T C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCAATGGAGC
ACTAGCCAATCA---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C T G C A C G T A C G A T A T C G A C T G C G T A A C T G A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CCAATGGAGC--
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C T G C A C G T A C G A T A T C G A C T G C G T A A C T G A G T C A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCAATGGAGC
GAACAATGG---
 A C G T A C G T A G T C A G T C T G C A C G T A C G A T A T C G A C T G C G T A A C T G A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCAATGGAGC
AACAAAGG---
 A C G T A G T C A G T C T G C A C G T A C G A T A T C G A C T G C G T A A C T G A G T C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCAATGGAGC
VRAACAATGG---
 A C G T A C G T A C G T A G T C A G T C T G C A C G T A C G A T A T C G A C T G C G T A A C T G A G T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CCAATGGAGC-
------CAGCC
 A G T C A G T C T G C A C G T A C G A T A T C G A C T G C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCAATGGAGC
RACAAWGG---
 A C G T A G T C A G T C T G C A C G T A C G A T A T C G A C T G C G T A A C T G A G T C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCAATGGAGC-
GRTGMTRGAGCC
 A C G T A G T C A G T C T G C A C G T A C G A T A T C G A C T G C G T A A C T G A G T C A C G T
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C