Information for 11-AGAGGAGCCGGAC (Motif 13)

C T G A A C T G C G T A A C T G A C T G G T C A A C T G A G T C A G T C A C T G A C T G C G T A A T G C
Reverse Opposite:
A T C G C G A T A G T C A G T C A C T G A C T G A G T C A C G T G T A C A G T C A C G T A G T C A G C T
p-value:1e-11
log p-value:-2.634e+01
Information Content per bp:1.928
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.5 +/- 27.6bp
Average Position of motif in Background63.3 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGAGGAGCCGGAC--
--AGGTGNCAGACAG
 C T G A A C T G C G T A A C T G A C T G G T C A A C T G A G T C A G T C A C T G A C T G C G T A A T G C A C G T A C G T
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGAGGAGCCGGAC-
--AGGTGHCAGACA
 C T G A A C T G C G T A A C T G A C T G G T C A A C T G A G T C A G T C A C T G A C T G C G T A A T G C A C G T
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PB0077.1_Spdef_1/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGAGGAGCCGGAC----
-AANNATCCGGATGTNN
 C T G A A C T G C G T A A C T G A C T G G T C A A C T G A G T C A G T C A C T G A C T G C G T A A T G C A C G T A C G T A C G T A C G T
A C G T T C G A C T G A C T G A C G T A C G T A G A C T T A G C T G A C A C T G A C T G C G T A G C A T T C A G G A C T C T G A A G T C

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGAGGAGCCGGAC
--CGGAGC-----
 C T G A A C T G C G T A A C T G A C T G G T C A A C T G A G T C A G T C A C T G A C T G C G T A A T G C
A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGAGGAGCCGGAC-
----GGGCGGGACC
 C T G A A C T G C G T A A C T G A C T G G T C A A C T G A G T C A G T C A C T G A C T G C G T A A T G C A C G T
A C G T A C G T A C G T A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C

PB0010.1_Egr1_1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGAGGAGCCGGAC
ANTGCGGGGGCGGN-
 A C G T A C G T C T G A A C T G C G T A A C T G A C T G G T C A A C T G A G T C A G T C A C T G A C T G C G T A A T G C
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGAGCCGGAC-
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C G T C T G A A C T G C G T A A C T G A C T G G T C A A C T G A G T C A G T C A C T G A C T G C G T A A T G C A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

PB0117.1_Eomes_2/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AGAGGAGCCGGAC-
GCGGAGGTGTCGCCTC
 A C G T A C G T C T G A A C T G C G T A A C T G A C T G G T C A A C T G A G T C A G T C A C T G A C T G C G T A A T G C A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

SP2/MA0516.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AGAGGAGCCGGAC
GGGNGGGGGCGGGGC
 A C G T A C G T C T G A A C T G C G T A A C T G A C T G G T C A A C T G A G T C A G T C A C T G A C T G C G T A A T G C
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C

Sp1(Zf)/Promoter/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AGAGGAGCCGGAC-
--GGGGGCGGGGCC
 C T G A A C T G C G T A A C T G A C T G G T C A A C T G A G T C A G T C A C T G A C T G C G T A A T G C A C G T
A C G T A C G T T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C