Information for 13-GGGAATCCCCTTT (Motif 17)

T A C G A C T G C T A G T G C A G C T A G A C T A T G C A G T C G A T C G T A C G A C T A C G T C G A T
Reverse Opposite:
C G T A G T C A C T G A C A T G C T A G C T A G T A C G C T G A C G A T A C G T A G T C A G T C A T G C
p-value:1e-9
log p-value:-2.142e+01
Information Content per bp:1.641
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.83%
Number of Background Sequences with motif265.1
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets42.2 +/- 19.7bp
Average Position of motif in Background48.0 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GGGAATCCCCTTT
GGAAATCCCC---
 T A C G A C T G C T A G T G C A G C T A G A C T A T G C A G T C G A T C G T A C G A C T A C G T C G A T
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GGGAATCCCCTTT
AGGGGATTCCCCT--
 A C G T A C G T T A C G A C T G C T A G T G C A G C T A G A C T A T G C A G T C G A T C G T A C G A C T A C G T C G A T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GGGAATCCCCTTT
AGGGGATTCCCCT--
 A C G T A C G T T A C G A C T G C T A G T G C A G C T A G A C T A T G C A G T C G A T C G T A C G A C T A C G T C G A T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GGGAATCCCCTTT
GGGGGAATCCCC---
 A C G T A C G T T A C G A C T G C T A G T G C A G C T A G A C T A T G C A G T C G A T C G T A C G A C T A C G T C G A T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GGGAATCCCCTTT
GGGAAATCCCCN--
 A C G T T A C G A C T G C T A G T G C A G C T A G A C T A T G C A G T C G A T C G T A C G A C T A C G T C G A T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GGGAATCCCCTTT
GGAAATTCCC---
 T A C G A C T G C T A G T G C A G C T A G A C T A T G C A G T C G A T C G T A C G A C T A C G T C G A T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGGAATCCCCTTT
GGAAANCCCC---
 T A C G A C T G C T A G T G C A G C T A G A C T A T G C A G T C G A T C G T A C G A C T A C G T C G A T
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGGAATCCCCTTT
GGAAATTCCC---
 T A C G A C T G C T A G T G C A G C T A G A C T A T G C A G T C G A T C G T A C G A C T A C G T C G A T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGGAATCCCCTTT---
AGGAGACCCCCAATTTG
 A C G T T A C G A C T G C T A G T G C A G C T A G A C T A T G C A G T C G A T C G T A C G A C T A C G T C G A T A C G T A C G T A C G T
C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.56
Offset:8
Orientation:forward strand
Alignment:GGGAATCCCCTTT---
--------CCTTTGTT
 T A C G A C T G C T A G T G C A G C T A G A C T A T G C A G T C G A T C G T A C G A C T A C G T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T