Information for 19-AGATTAATCTTGA (Motif 20)

C T G A A T C G C G T A A C G T A C G T C G T A G T C A A C G T A T G C A C G T A C G T A T C G C G T A
Reverse Opposite:
A C G T A T G C C G T A C G T A T A C G C G T A A C G T A C G T C G T A C G T A C G A T A T G C A G C T
p-value:1e-7
log p-value:-1.667e+01
Information Content per bp:1.844
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.2 +/- 24.5bp
Average Position of motif in Background70.2 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AGATTAATCTTGA---
---TTAATGTTTAACC
 C T G A A T C G C G T A A C G T A C G T C G T A G T C A A C G T A T G C A C G T A C G T A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AGATTAATCTTGA
TGTAGGGATTAATTGTC-
 A C G T A C G T A C G T A C G T A C G T C T G A A T C G C G T A A C G T A C G T C G T A G T C A A C G T A T G C A C G T A C G T A T C G C G T A
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AGATTAATCTTGA
TGAAGGGATTAATCATC-
 A C G T A C G T A C G T A C G T A C G T C T G A A T C G C G T A A C G T A C G T C G T A G T C A A C G T A T G C A C G T A C G T A T C G C G T A
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGATTAATCTTGA
--TTTAAT-----
 C T G A A T C G C G T A A C G T A C G T C G T A G T C A A C G T A T G C A C G T A C G T A T C G C G T A
A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGATTAATCTTGA
---TTAATCCT--
 C T G A A T C G C G T A A C G T A C G T C G T A G T C A A C G T A T G C A C G T A C G T A T C G C G T A
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T

PH0129.1_Otx1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AGATTAATCTTGA
AGAGGGGATTAATTTAT-
 A C G T A C G T A C G T A C G T A C G T C T G A A T C G C G T A A C G T A C G T C G T A G T C A A C G T A T G C A C G T A C G T A T C G C G T A
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGATTAATCTTGA
RGGATTAR------
 A C G T C T G A A T C G C G T A A C G T A C G T C G T A G T C A A C G T A T G C A C G T A C G T A T C G C G T A
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGATTAATCTTGA
ATATTAATTAA--
 C T G A A T C G C G T A A C G T A C G T C G T A G T C A A C G T A T G C A C G T A C G T A T C G C G T A
C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:9
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------AGATTAATCTTGA
TGAACCGGATTAATGAA--
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T C G C G T A A C G T A C G T C G T A G T C A A C G T A T G C A C G T A C G T A T C G C G T A
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A A C G T A C G T

PH0025.1_Dmbx1/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------AGATTAATCTTGA
TGAACCGGATTAATGAA--
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T C G C G T A A C G T A C G T C G T A G T C A A C G T A T G C A C G T A C G T A T C G C G T A
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A A C G T A C G T