Information for 13-GCGCGCAGCCAAT (Motif 12)

A C T G A G T C A C T G A G T C T A C G A T G C C G T A A C T G A G T C A G T C C G T A C G T A A G C T
Reverse Opposite:
C T G A A C G T A C G T A C T G A C T G A G T C A C G T A T C G A T G C A C T G A G T C A C T G A G T C
p-value:1e-10
log p-value:-2.474e+01
Information Content per bp:1.943
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.2 +/- 19.0bp
Average Position of motif in Background79.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GCGCGCAGCCAAT--
---ACTAGCCAATCA
 A C T G A G T C A C T G A G T C T A C G A T G C C G T A A C T G A G T C A G T C C G T A C G T A A G C T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.65
Offset:6
Orientation:forward strand
Alignment:GCGCGCAGCCAAT---
------AGCCAATCGG
 A C T G A G T C A C T G A G T C T A C G A T G C C G T A A C T G A G T C A G T C C G T A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCGCGCAGCCAAT
TGGCACCATGCCAA-
 A C G T A C G T A C T G A G T C A C T G A G T C T A C G A T G C C G T A A C T G A G T C A G T C C G T A C G T A A G C T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:GCGCGCAGCCAAT
------TGCCAA-
 A C T G A G T C A C T G A G T C T A C G A T G C C G T A A C T G A G T C A G T C C G T A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

PB0095.1_Zfp161_1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCGCGCAGCCAAT
TGGCGCGCGCGCCTGA-
 A C G T A C G T A C G T A C G T A C T G A G T C A C T G A G T C T A C G A T G C C G T A A C T G A G T C A G T C C G T A C G T A A G C T
C A G T C T A G C T A G A T G C T C A G G A T C C T A G A G T C C T A G A G T C C T A G G A T C G A T C G A C T C T A G C G T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GCGCGCAGCCAAT
----BCAGACWA-
 A C T G A G T C A C T G A G T C T A C G A T G C C G T A A C T G A G T C A G T C C G T A C G T A A G C T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCGCGCAGCCAAT
----CGTGCCAAG
 A C T G A G T C A C T G A G T C T A C G A T G C C G T A A C T G A G T C A G T C C G T A C G T A A G C T
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCGCGCAGCCAAT
CTTGGCANNNTGCCAA-
 A C G T A C G T A C G T A C G T A C T G A G T C A C T G A G T C T A C G A T G C C G T A A C T G A G T C A G T C C G T A C G T A A G C T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCGCGCAGCCAAT
TGGCAGNCTGCCAG-
 A C G T A C G T A C T G A G T C A C T G A G T C T A C G A T G C C G T A A C T G A G T C A G T C C G T A C G T A A G C T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCGCGCAGCCAAT---
-AAATGGACCAATCAG
 A C T G A G T C A C T G A G T C T A C G A T G C C G T A A C T G A G T C A G T C C G T A C G T A A G C T A C G T A C G T A C G T
A C G T T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G