Information for 5-GGGRTTTCCCYWB (Motif 5)

A C T G C A T G C T A G C T G A G C A T A C G T G C A T A G T C A G T C G A T C G A C T G C A T A T G C
Reverse Opposite:
T A C G C G T A C T G A C T A G C T A G T C A G C G T A G T C A C G T A A G C T G A T C G T A C G T A C
p-value:1e-17
log p-value:-4.116e+01
Information Content per bp:1.575
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif11.41%
Number of Background Sequences with motif1906.4
Percentage of Background Sequences with motif3.96%
Average Position of motif in Targets55.8 +/- 26.4bp
Average Position of motif in Background50.3 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--GGGRTTTCCCYWB
NGGGGATTTCCC---
 A C G T A C G T A C T G C A T G C T A G C T G A G C A T A C G T G C A T A G T C A G T C G A T C G A C T G C A T A T G C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GGGRTTTCCCYWB
GGGGATTTCC----
 A C G T A C T G C A T G C T A G C T G A G C A T A C G T G C A T A G T C A G T C G A T C G A C T G C A T A T G C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GGGRTTTCCCYWB
GGGAATTTCC----
 A C G T A C T G C A T G C T A G C T G A G C A T A C G T G C A T A G T C A G T C G A T C G A C T G C A T A T G C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GGGRTTTCCCYWB
GGGGATTTCC---
 A C T G C A T G C T A G C T G A G C A T A C G T G C A T A G T C A G T C G A T C G A C T G C A T A T G C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GGGRTTTCCCYWB
GGGAATTTCC----
 A C G T A C T G C A T G C T A G C T G A G C A T A C G T G C A T A G T C A G T C G A T C G A C T G C A T A T G C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGGRTTTCCCYWB
GGGGATTCCCCC-
 A C T G C A T G C T A G C T G A G C A T A C G T G C A T A G T C A G T C G A T C G A C T G C A T A T G C
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGGRTTTCCCYWB
AGGGGATTCCCCT-
 A C G T A C T G C A T G C T A G C T G A G C A T A C G T G C A T A G T C A G T C G A T C G A C T G C A T A T G C
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGGRTTTCCCYWB
AGGGGATTCCCCT-
 A C G T A C T G C A T G C T A G C T G A G C A T A C G T G C A T A G T C A G T C G A T C G A C T G C A T A T G C
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GGGRTTTCCCYWB
---ATTTTCCATT
 A C T G C A T G C T A G C T G A G C A T A C G T G C A T A G T C A G T C G A T C G A C T G C A T A T G C
A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

SPIB/MA0081.1/Jaspar

Match Rank:10
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GGGRTTTCCCYWB
-----TTCCTCT-
 A C T G C A T G C T A G C T G A G C A T A C G T G C A T A G T C A G T C G A T C G A C T G C A T A T G C
A C G T A C G T A C G T A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T A C G T