Information for 13-AGCCACAAAA (Motif 20)

T G C A A C T G A G T C A G T C G T C A G T A C C G T A C T G A C G T A G C T A
Reverse Opposite:
C G A T C G A T A G C T C G A T A C T G C A G T C T A G T C A G A G T C A C G T
p-value:1e-8
log p-value:-1.994e+01
Information Content per bp:1.827
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif181.6
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets38.9 +/- 29.5bp
Average Position of motif in Background54.3 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGCCACAAAA
AAACCACAGAN
 A C G T T G C A A C T G A G T C A G T C G T C A G T A C C G T A C T G A C G T A G C T A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGCCACAAAA
AAGCCATAAAA
 A C G T T G C A A C T G A G T C A G T C G T C A G T A C C G T A C T G A C G T A G C T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AGCCACAAAA----
AGAGCCATAAAATTCG
 A C G T A C G T T G C A A C T G A G T C A G T C G T C A G T A C C G T A C T G A C G T A G C T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGCCACAAAA
NWAACCACADNN
 A C G T A C G T T G C A A C T G A G T C A G T C G T C A G T A C C G T A C T G A C G T A G C T A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGCCACAAAA
AAACCACANN-
 A C G T T G C A A C T G A G T C A G T C G T C A G T A C C G T A C T G A C G T A G C T A
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGCCACAAAA-
-GTCATAAAAN
 T G C A A C T G A G T C A G T C G T C A G T A C C G T A C T G A C G T A G C T A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

RUNX3/MA0684.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGCCACAAAA
AAACCGCAAA-
 A C G T T G C A A C T G A G T C A G T C G T C A G T A C C G T A C T G A C G T A G C T A
G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGCCACAAAA-----
ACGGCCATAAAATTAAT
 A C G T A C G T T G C A A C T G A G T C A G T C G T C A G T A C C G T A C T G A C G T A G C T A A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGCCACAAAA----
CGAAGCACACAAAATA
 A C G T A C G T T G C A A C T G A G T C A G T C G T C A G T A C C G T A C T G A C G T A G C T A A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGCCACAAAA
NAAACCACAG--
 A C G T A C G T T G C A A C T G A G T C A G T C G T C A G T A C C G T A C T G A C G T A G C T A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T