Information for 8-GCACTCTAGG (Motif 6)

A C T G A G T C G T C A A G T C C G A T A T G C A C G T C G T A A C T G T A C G
Reverse Opposite:
A G T C A G T C A C G T C G T A A T C G C G T A T A C G A C G T A C T G G T A C
p-value:1e-15
log p-value:-3.672e+01
Information Content per bp:1.838
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif9.8
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets61.1 +/- 20.1bp
Average Position of motif in Background60.2 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCACTCTAGG
AGCCACTCAAG-
 A C G T A C G T A C T G A G T C G T C A A G T C C G A T A T G C A C G T C G T A A C T G T A C G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GCACTCTAGG
NSCACTYVAV-
 A C G T A C T G A G T C G T C A A G T C C G A T A T G C A C G T C G T A A C T G T A C G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCACTCTAGG
RSCACTYRAG-
 A C G T A C T G A G T C G T C A A G T C C G A T A T G C A C G T C G T A A C T G T A C G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCACTCTAGG----
ACCACTCTCGGTCAC
 A C G T A C T G A G T C G T C A A G T C C G A T A T G C A C G T C G T A A C T G T A C G A C G T A C G T A C G T A C G T
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCACTCTAGG
AASCACTCAA--
 A C G T A C G T A C T G A G T C G T C A A G T C C G A T A T G C A C G T C G T A A C T G T A C G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCACTCTAGG----
AGTATTCTCGGTTGC
 A C G T A C T G A G T C G T C A A G T C C G A T A T G C A C G T C G T A A C T G T A C G A C G T A C G T A C G T A C G T
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCACTCTAGG
MRSCACTYAA--
 A C G T A C G T A C T G A G T C G T C A A G T C C G A T A T G C A C G T C G T A A C T G T A C G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCACTCTAGG---
NGCTTTCTAGGAAN
 A C G T A C T G A G T C G T C A A G T C C G A T A T G C A C G T C G T A A C T G T A C G A C G T A C G T A C G T
C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCACTCTAGG----
NNAATTCTCGNTNAN
 A C G T A C T G A G T C G T C A A G T C C G A T A T G C A C G T C G T A A C T G T A C G A C G T A C G T A C G T A C G T
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCACTCTAGG
AAGCACTTAA--
 A C G T A C G T A C T G A G T C G T C A A G T C C G A T A T G C A C G T C G T A A C T G T A C G
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T