Information for 18-CWWGATCTAC (Motif 24)

A G T C G C A T C G T A A C T G C G T A A G C T A G T C A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C T G C T G A C G A T A G T C C G A T C G T A A C T G
p-value:1e-8
log p-value:-1.896e+01
Information Content per bp:1.860
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.0 +/- 27.5bp
Average Position of motif in Background50.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CWWGATCTAC-----
-TTGACCTANTTATN
 A G T C G C A T C G T A A C T G C G T A A G C T A G T C A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CWWGATCTAC
TGACCTTGACCT--
 A C G T A C G T A C G T A C G T A G T C G C A T C G T A A C T G C G T A A G C T A G T C A C G T C G T A A G T C
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CWWGATCTAC--
--TGACCTARTT
 A G T C G C A T C G T A A C T G C G T A A G C T A G T C A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CWWGATCTAC
TGACCTTGACCT--
 A C G T A C G T A C G T A C G T A G T C G C A T C G T A A C T G C G T A A G C T A G T C A C G T C G T A A G T C
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CWWGATCTAC
--TGACCT--
 A G T C G C A T C G T A A C T G C G T A A G C T A G T C A C G T C G T A A G T C
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CWWGATCTAC--
--TGACCTTGAT
 A G T C G C A T C G T A A C T G C G T A A G C T A G T C A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CWWGATCTAC
-GTGACCTT-
 A G T C G C A T C G T A A C T G C G T A A G C T A G T C A C G T C G T A A G T C
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CWWGATCTAC-
NGNTCTAGAACCNGV
 A C G T A C G T A C G T A C G T A G T C G C A T C G T A A C T G C G T A A G C T A G T C A C G T C G T A A G T C A C G T
C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CWWGATCTAC-
-ATGACCTTGA
 A G T C G C A T C G T A A C T G C G T A A G C T A G T C A C G T C G T A A G T C A C G T
A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

PB0161.1_Rxra_2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CWWGATCTAC----
NNNNCAACCTTCGNGA
 A C G T A C G T A G T C G C A T C G T A A C T G C G T A A G C T A G T C A C G T C G T A A G T C A C G T A C G T A C G T A C G T
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A