Information for 5-GAAATTTCAA (Motif 9)

A T C G T C G A C T G A C G T A A C G T A C G T A C G T A G T C G T C A C G T A
Reverse Opposite:
C G A T A C G T A C T G C G T A T G C A C G T A A C G T A G C T A C G T T A G C
p-value:1e-9
log p-value:-2.239e+01
Information Content per bp:1.840
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif90.3
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets55.8 +/- 24.8bp
Average Position of motif in Background47.1 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0169.1_Sox15_2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GAAATTTCAA----
TNGAATTTCATTNAN
 A C G T A T C G T C G A C T G A C G T A A C G T A C G T A C G T A G T C G T C A C G T A A C G T A C G T A C G T A C G T
A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAAATTTCAA-
-CGGTTTCAAA
 A T C G T C G A C T G A C G T A A C G T A C G T A C G T A G T C G T C A C G T A A C G T
A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAAATTTCAA
GGGAATTTCC-
 A C G T A T C G T C G A C T G A C G T A A C G T A C G T A C G T A G T C G T C A C G T A
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GAAATTTCAA-
--NATTCAAAT
 A T C G T C G A C T G A C G T A A C G T A C G T A C G T A G T C G T C A C G T A A C G T
A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PB0146.1_Mafk_2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GAAATTTCAA--
GAAAAAATTGCAAGG
 A C G T A C G T A C G T A T C G T C G A C T G A C G T A A C G T A C G T A C G T A G T C G T C A C G T A A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAAATTTCAA---
---ACATCAAAGG
 A T C G T C G A C T G A C G T A A C G T A C G T A C G T A G T C G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GAAATTTCAA
ANGNAAAGGTCA-
 A C G T A C G T A C G T A T C G T C G A C T G A C G T A A C G T A C G T A C G T A G T C G T C A C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAAATTTCAA
-AAAAGTCAA
 A T C G T C G A C T G A C G T A A C G T A C G T A C G T A G T C G T C A C G T A
A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

NFAT5/MA0606.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAAATTTCAA--
--ATTTTCCATT
 A T C G T C G A C T G A C G T A A C G T A C G T A C G T A G T C G T C A C G T A A C G T A C G T
A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAAATTTCAA
GGGAATTTCC-
 A C G T A T C G T C G A C T G A C G T A A C G T A C G T A C G T A G T C G T C A C G T A
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T