Information for 7-CCAAACTTCA (Motif 5)

A G T C G T A C T C G A C G T A G C T A A G T C A G C T G C A T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A C T G A C T A G C G A T G C A T A G C T A C T G C T A G
p-value:1e-10
log p-value:-2.415e+01
Information Content per bp:1.830
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif97.7
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets43.9 +/- 25.1bp
Average Position of motif in Background47.5 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CCAAACTTCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C T C G A C G T A G C T A A G T C A G C T G C A T A G T C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCAAACTTCA
-CAAGCTT--
 A G T C G T A C T C G A C G T A G C T A A G T C A G C T G C A T A G T C C G T A
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCAAACTTCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C T C G A C G T A G C T A A G T C A G C T G C A T A G T C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CCAAACTTCA
----GCTTCC
 A G T C G T A C T C G A C G T A G C T A A G T C A G C T G C A T A G T C C G T A
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CCAAACTTCA
----ACGTCA
 A G T C G T A C T C G A C G T A G C T A A G T C A G C T G C A T A G T C C G T A
A C G T A C G T A C G T A C G T C T G A A G T C T C A G A C G T G T A C C G T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCAAACTTCA-
-CAAAGGTCAG
 A G T C G T A C T C G A C G T A G C T A A G T C A G C T G C A T A G T C C G T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0161.1_Rxra_2/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCAAACTTCA---
NNNNCAACCTTCGNGA
 A C G T A C G T A C G T A G T C G T A C T C G A C G T A G C T A A G T C A G C T G C A T A G T C C G T A A C G T A C G T A C G T
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCAAACTTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A G T C G T A C T C G A C G T A G C T A A G T C A G C T G C A T A G T C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCAAACTTCA----
GGCAAAAGTCCAATAA
 A C G T A C G T A G T C G T A C T C G A C G T A G C T A A G T C A G C T G C A T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PH0134.1_Pbx1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCAAACTTCA-------
TCACCCATCAATAAACA
 A G T C G T A C T C G A C G T A G C T A A G T C A G C T G C A T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A