Information for 5-TYYTRAAAASTTT (Motif 11)

A C G T G A C T A G C T A C G T C T G A C G T A C G T A C G T A C G T A A T C G A C G T A C G T A G C T
Reverse Opposite:
C T G A C G T A C G T A A T G C A C G T A C G T G C A T A C G T A G C T C G T A C T G A C T G A C G T A
p-value:1e-7
log p-value:-1.674e+01
Information Content per bp:1.857
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets36.6 +/- 24.5bp
Average Position of motif in Background62.6 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD11/MA0908.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TYYTRAAAASTTT
GTCGTAAAAA----
 A C G T A C G T G A C T A G C T A C G T C T G A C G T A C G T A C G T A C G T A A T C G A C G T A C G T A G C T
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T A C G T A C G T

HSF2/MA0770.1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TYYTRAAAASTTT
TTCTAGAACGTTC
 A C G T G A C T A G C T A C G T C T G A C G T A C G T A C G T A C G T A A T C G A C G T A C G T A G C T
C G A T C A G T T G A C A G C T T C G A C T A G G T C A C G T A A G T C C T A G C G A T G A C T A G T C

HOXC10/MA0905.1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TYYTRAAAASTTT
GTCGTAAAAT----
 A C G T A C G T G A C T A G C T A C G T C T G A C G T A C G T A C G T A C G T A A T C G A C G T A C G T A G C T
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TYYTRAAAASTTT
AGTCGTAAAAA----
 A C G T A C G T A C G T G A C T A G C T A C G T C T G A C G T A C G T A C G T A C G T A A T C G A C G T A C G T A G C T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T A C G T A C G T A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TYYTRAAAASTTT
GGTCGTAAAAA----
 A C G T A C G T A C G T G A C T A G C T A C G T C T G A C G T A C G T A C G T A C G T A A T C G A C G T A C G T A G C T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T A C G T A C G T A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----TYYTRAAAASTTT
TAAGGTCGTAAAATCCT-
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T A G C T A C G T C T G A C G T A C G T A C G T A C G T A A T C G A C G T A C G T A G C T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TYYTRAAAASTTT
GCTCGTAAAAA----
 A C G T A C G T A C G T G A C T A G C T A C G T C T G A C G T A C G T A C G T A C G T A A T C G A C G T A C G T A G C T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TYYTRAAAASTTT
NNCNNAACAATTNT
 A C G T A C G T G A C T A G C T A C G T C T G A C G T A C G T A C G T A C G T A A T C G A C G T A C G T A G C T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

HOXC11/MA0651.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TYYTRAAAASTTT
GGTCGTAAAAT----
 A C G T A C G T A C G T G A C T A G C T A C G T C T G A C G T A C G T A C G T A C G T A A T C G A C G T A C G T A G C T
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T A C G T A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TYYTRAAAASTTT
AAAGCTCGTAAAATTT--
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T A G C T A C G T C T G A C G T A C G T A C G T A C G T A A T C G A C G T A C G T A G C T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T A C G T