Information for 5-KGGGATTTCCCHB (Motif 7)

C A T G A C T G C T A G T C A G T G C A C G A T A C G T A G C T A G T C G T A C G T A C G C A T A C G T
Reverse Opposite:
T G C A C G T A A C T G C A T G T C A G T C G A T G C A G C T A A C G T A G T C A G T C T G A C G T A C
p-value:1e-18
log p-value:-4.197e+01
Information Content per bp:1.514
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.52%
Number of Background Sequences with motif517.5
Percentage of Background Sequences with motif1.09%
Average Position of motif in Targets45.4 +/- 24.3bp
Average Position of motif in Background49.7 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-KGGGATTTCCCHB
NGGGGATTTCCC--
 A C G T C A T G A C T G C T A G T C A G T G C A C G A T A C G T A G C T A G T C G T A C G T A C G C A T A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.84
Offset:0
Orientation:forward strand
Alignment:KGGGATTTCCCHB
GGGGATTTCC---
 C A T G A C T G C T A G T C A G T G C A C G A T A C G T A G C T A G T C G T A C G T A C G C A T A C G T
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.84
Offset:0
Orientation:forward strand
Alignment:KGGGATTTCCCHB
GGGAATTTCC---
 C A T G A C T G C T A G T C A G T G C A C G A T A C G T A G C T A G T C G T A C G T A C G C A T A C G T
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.83
Offset:0
Orientation:forward strand
Alignment:KGGGATTTCCCHB
GGGGATTTCC---
 C A T G A C T G C T A G T C A G T G C A C G A T A C G T A G C T A G T C G T A C G T A C G C A T A C G T
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:KGGGATTTCCCHB
GGGAATTTCC---
 C A T G A C T G C T A G T C A G T G C A C G A T A C G T A G C T A G T C G T A C G T A C G C A T A C G T
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:KGGGATTTCCCHB
GGGGATTCCCCC-
 C A T G A C T G C T A G T C A G T G C A C G A T A C G T A G C T A G T C G T A C G T A C G C A T A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-KGGGATTTCCCHB
AGGGGATTCCCCT-
 A C G T C A T G A C T G C T A G T C A G T G C A C G A T A C G T A G C T A G T C G T A C G T A C G C A T A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-KGGGATTTCCCHB
AGGGGATTCCCCT-
 A C G T C A T G A C T G C T A G T C A G T G C A C G A T A C G T A G C T A G T C G T A C G T A C G C A T A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:9
Score:0.70
Offset:4
Orientation:forward strand
Alignment:KGGGATTTCCCHB-
----ATTTTCCATT
 C A T G A C T G C T A G T C A G T G C A C G A T A C G T A G C T A G T C G T A C G T A C G C A T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

NFATC2/MA0152.1/Jaspar

Match Rank:10
Score:0.67
Offset:5
Orientation:forward strand
Alignment:KGGGATTTCCCHB
-----TTTTCCA-
 C A T G A C T G C T A G T C A G T G C A C G A T A C G T A G C T A G T C G T A C G T A C G C A T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A A C G T